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Identifier Type Title Topic Level Length
GTN:N00072 News GTN ❤️ GMOD
new topicnew featuregenome-annotationGMOD
TBA Slides Introduction to Synthetic Biology
 Synthetic Biology
TBA Slides Galaxy from a developer point of view
 Development in Galaxy
TBA Slides Introduction to Muon Spectroscopy
 Materials Science
TBA Slides Lorum Ipsum
testpagelanguage		 Introductory 42M
TBA Slides Introducción al análisis de datos de scRNA-seq
single-cell		 Single Cell 30m
TBA Slides Una breve introducción a Galaxy
 Introduction to Galaxy Analyses
TBA Slides Lorum Ipsum
testpagelanguage		 Introductory 42M
TBA Slides Una introducción al análisis de datos scRNA-seq
single-cell		 Single Cell Intermediate 30m
TBA Slides Una Breve Introducción a Galaxy
 Introduction to Galaxy Analyses
TBA Slides Lorum Ipsum
testpagelanguage		 Introductory 42M
TBA Slides Lorum Ipsum
testpagelanguage		 Intermediate 42M
TBA Hands-on Setting up a dev Onedata instance
storage		 Development in Galaxy Introductory 20m
TBA Hands-on Preview the GTN website as you edit your training material
Choose your own AdventureGitPodCodeSpacesCommand-line		 Contributing to the Galaxy Training Material 20m
TBA Hands-on Contributing to the Galaxy Training Network with GitHub
 Contributing to the Galaxy Training Material 30m
GTN:T00322 Hands-on Genomic Data Visualisation with JBrowse
gmodjbrowse1		 Visualisation Intermediate 1h
GTN:T00169 Hands-on Refining Genome Annotations with Apollo (prokaryotes)
gmodprokaryotemicrogalaxyjbrowse1apollo2		 Genome Annotation Intermediate 3h
GTN:T00168 Hands-on Genome annotation with Prokka
gmodprokaryotemicrogalaxyjbrowse1		 Genome Annotation Introductory 1h
GTN:T00401 Hands-on Identification of AMR genes in an assembled bacterial genome
gmodilluminaamrone-healthjbrowse1microgalaxy		 Genome Annotation Introductory 2h
GTN:T00167 Hands-on Genome annotation with Maker (short)
gmodeukaryotemakerjbrowse1		 Genome Annotation Intermediate 2h
TBA Hands-on Dataset construction for bacterial comparative genomics
microgalaxywork-in-progress		 Genome Annotation Introductory 1H
GTN:T00170 Hands-on Refining Genome Annotations with Apollo (eukaryotes)
gmodeukaryotecyoajbrowse1apollo2		 Genome Annotation Intermediate 3h
GTN:T00166 Hands-on Genome annotation with Maker
gmodeukaryotejbrowse1maker		 Genome Annotation Advanced 4h
TBA Hands-on Bacterial pangenomics
 Genome Annotation Introductory 1H
TBA Hands-on Genome annotation with Braker3
eukaryotaBraker3jbrowse1		 Genome Annotation Intermediate 8h
GTN:T00172 Hands-on Genome annotation with Funannotate
gmodeukaryotejbrowse1		 Genome Annotation Intermediate 8h
TBA Hands-on Bacterial genome quality control
microgalaxywork-in-progress		 Genome Annotation Introductory 1H
GTN:T00370 Hands-on Creating an Official Gene Set
gmodapollo2work-in-progress		 Genome Annotation 30M
GTN:T00403 Hands-on Bacterial Genome Annotation
gmodilluminabacteriamicrogalaxyjbrowse1		 Genome Annotation Introductory 3H
TBA Hands-on Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology		 Sequence analysis Introductory 1H
GTN:T00356 Hands-on SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19gmodjbrowse1		 Sequence analysis Introductory 1H
TBA Hands-on Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants		 Sequence analysis 2H
TBA Hands-on Regulations/standards for AI using DOME
elixirai-mlwork-in-progressjupyter-notebook		 Statistics and machine learning Intermediate 3H
TBA Hands-on Generative Artificial Intelligence and Large Langage Model using Python
elixirai-mlwork-in-progressjupyter-notebook		 Statistics and machine learning Intermediate 3H
TBA Hands-on Foundational Aspects of Machine Learning using Python
elixirai-mlwork-in-progressjupyter-notebook		 Statistics and machine learning Intermediate 3H
TBA Hands-on Deep Learning (without Generative Artificial Intelligence) using Python
elixirai-mlwork-in-progressjupyter-notebook		 Statistics and machine learning Intermediate 3H
TBA Hands-on Text-Mining Differences in Chinese Newspaper Articles
HumanitiesText_mining		 Statistics and machine learning Introductory 1H
TBA Hands-on Neural networks using Python
elixirai-mlwork-in-progressjupyter-notebook		 Statistics and machine learning Intermediate 3H
TBA Hands-on Building the LORIS LLR6 PanCancer Model Using PyCaret
LORIS Score ModelMachine LearningPyCaret		 Statistics and machine learning Intermediate 1H
TBA Hands-on Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy
 Imaging Intermediate 1H
TBA Hands-on Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines
RNAsmFISHbioimaging		 Imaging Introductory 30m
TBA Hands-on Clustering 3K PBMCs with Seurat
10x		 Single Cell Introductory 8H
TBA Hands-on Evaluating Reference Data for Bulk RNA Deconvolution
transcriptomics		 Single Cell 2H
TBA Hands-on Pseudobulk Analysis with Decoupler and EdgeR
transcriptomicspseudobulk		 Single Cell 3H
TBA Hands-on Multi-sample batch correction with Harmony and SnapATAC2
10xepigenetics		 Single Cell Intermediate 4H
TBA Hands-on Importing (uploading) data from Onedata
storage		 Using Galaxy and Managing your Data Introductory 15m
GTN:T00152 Hands-on InterMine integration with Galaxy
gmodintermine		 Using Galaxy and Managing your Data 1h
TBA Hands-on Exporting to Onedata remote
storage		 Using Galaxy and Managing your Data Introductory 5m
TBA Hands-on Getting started with Onedata distributed storage
storage		 Using Galaxy and Managing your Data Introductory 20m
TBA Hands-on Onedata user-owned storage
storage		 Using Galaxy and Managing your Data Introductory 15m
TBA Hands-on Neoantigen 5: Variant Annotation
label-free		 Proteomics 3H
TBA Hands-on Neoantigen 1: Fusion-Database-Generation
label-free		 Proteomics 2H
TBA Hands-on Single Cell Proteomics data analysis with bioconductor-scp
 Proteomics 3H
TBA Hands-on Neoantigen 6: Predicting HLA Binding
label-free		 Proteomics 3H
TBA Hands-on Neoantigen 3: Database merge and FragPipe discovery
label-free		 Proteomics 3H
TBA Hands-on Neoantigen 4: PepQuery2 Verification
label-free		 Proteomics 3H
TBA Hands-on Neoantigen 7: IEDB binding PepQuery Validated Neopeptides
label-free		 Proteomics 3H
TBA Hands-on Neoantigen 2: Non-Reference-Database-Generation
label-free		 Proteomics 3H
TBA Hands-on Multiomics data analysis using MultiGSEA
multi-omicstranscriptomicsproteomicsmetabolomics		 Proteomics 1H
GTN:T00032 Hands-on Making sense of a newly assembled genome
gmodprokaryotemicrogalaxyjbrowse1		 Assembly 4h
TBA Hands-on Phylogenetic analysis for bacterial comparative genomics
microgalaxywork-in-progress		 Evolution Introductory 1H
TBA Hands-on Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD)
storage		 Galaxy Server administration Intermediate 40m
TBA Hands-on Galaxy usage on SURF Research Cloud
deploying		 Galaxy Server administration Introductory 30m
TBA Hands-on Adding file-sources to Galaxy
earth-systemoceandatawork-in-progress		 Galaxy Server administration 15m
TBA Hands-on Pulsar usage on SURF Research Cloud
deploying		 Galaxy Server administration Introductory 30m
TBA Hands-on Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data
 Microbiome Introductory 1H
GTN:T00313 Hands-on Microbial Variant Calling
prokaryotemicrogalaxygmodjbrowse1		 Variant Analysis 45m
TBA Hands-on Creating community content
 Galaxy Community Building 30M
TBA Hands-on Cleaning GBIF data using OpenRefine
 Ecology 0h45m
TBA Hands-on Data submission using ENA upload Tool
 Ecology 2h
TBA Hands-on Python - Warm-up for statistics and machine learning
elixirai-mlwork-in-progressjupyter-notebook		 Foundations of Data Science Introductory 1H
TBA Hands-on Generación de una matriz de datos de secuenciación de ARN de células únicas utilizando Alevin
single-cell10xpaper-replicationtranscriptomics		 Single Cell Advanced 3H
TBA Hands-on Generación de una matriz de datos de secuenciación de ARN de células únicas utilizando Alevin
single-cell10xpaper-replicationtranscriptomics		 Single Cell Advanced 3H
TBA Hands-on Filtrado, representación y exploración de secuenciación de ARN de células únicas
single-cell10xpaper-replicationinteractive-toolstranscriptomics		 Single Cell Advanced 3H
TBA Hands-on Breve introducción a Galaxy - en español
 Introduction to Galaxy Analyses Introductory 30m
TBA Hands-on Production d'indicateurs champs de bloc
 Ecology 1H
TBA Workflow Metagenomics assembly tutorial workflow
 Assembly
TBA Workflow workflow-generate-dataset-for-assembly-tutorial
 Assembly
TBA Workflow WF2_Discovery-Workflow
 Microbiome
TBA Workflow WF3_VERIFICATION_WORKFLOW
 Microbiome
TBA Workflow WF4_Quantitation_Workflow
 Microbiome
TBA Workflow WF1_Database_Generation_Workflow
 Microbiome
TBA Workflow WF5_Data_Interpretation_Worklow
 Microbiome
TBA Workflow Data management in Medicinal Chemistry workflow
 FAIR Data, Workflows, and Research
TBA Workflow GTN Tutorial: Data manipulation Olympics - all steps and exercises
 Foundations of Data Science