The tutorial uses the normalised count table for visualisation. What about using VST normalised counts or rlog normalised counts?

this depends on what you would like to do with the table. The DESeq2 wrapper in Galaxy can output all of these, and there is a nice discussion in the DESeq2 vignette about this topic.

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{% snippet  topics/transcriptomics/tutorials/ref-based/faqs/ %}
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