Visualise amount of objects in Museum Collection

Run Workflow in Galaxy

• Galaxy Australia
• Galaxy France
• Galaxy Europe
• Galaxy Main
• Import to another server (≥23.0+ only!)

flowchart TD
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  style 0 stroke:#2c3143,stroke-width:4px;
  1["ℹ️ Input Dataset\nstop_words_english"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["Cut"];
  0 -->|output| 2;
  3["Filter Tabular"];
  2 -->|out_file1| 3;
  4["Column Regex Find And Replace"];
  3 -->|output| 4;
  5["Sort"];
  4 -->|out_file1| 5;
  6["Remove beginning"];
  5 -->|outfile| 6;
  7["Datamash"];
  6 -->|out_file1| 7;
  8["Sort"];
  7 -->|out_file| 8;
  9["Bar chart"];
  8 -->|outfile| 9;
  204d5ba9-e4d0-4bfd-a421-43b71f361bc9["Output\nout_file1"];
  9 --> 204d5ba9-e4d0-4bfd-a421-43b71f361bc9;
  style 204d5ba9-e4d0-4bfd-a421-43b71f361bc9 stroke:#2c3143,stroke-width:4px;
  10["Sort"];
  8 -->|outfile| 10;
  11["Select first"];
  10 -->|outfile| 11;
  12["Cut"];
  11 -->|outfile| 12;
  13["Parse parameter value"];
  12 -->|out_file1| 13;
  14["Compose text parameter value"];
  13 -->|text_param| 14;
  15["Search in textfiles"];
  0 -->|output| 15;
  14 -->|out1| 15;
  16["Cut"];
  15 -->|output| 16;
  17["Generate a word cloud"];
  1 -->|output| 17;
  16 -->|out_file1| 17;
  db4e9713-11f9-4f7b-b2a6-f0661e1f46f8["Output\noutput"];
  17 --> db4e9713-11f9-4f7b-b2a6-f0661e1f46f8;
  style db4e9713-11f9-4f7b-b2a6-f0661e1f46f8 stroke:#2c3143,stroke-width:4px;

Inputs

Outputs

Tools

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Importing into Galaxy

Hands On: Importing a workflow

1. Click on galaxy-workflows-activity Workflows in the Galaxy activity bar (on the left side of the screen, or in the top menu bar of older Galaxy instances). You will see a list of all your workflows
2. Click on galaxy-upload Import at the top-right of the screen
3. Provide your workflow
   • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
   • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
4. Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Version History

For Admins

Installing the workflow tools

wget https://training.galaxyproject.org/training-material/topics/digital-humanities/tutorials/open-refine-tutorial/workflows/Visualise-amount-of-objects-in-Museum-Collection.ga -O workflow.ga
workflow-to-tools -w workflow.ga -o tools.yaml
shed-tools install -g GALAXY -a API_KEY -t tools.yaml
workflow-install -g GALAXY -a API_KEY -w workflow.ga --publish-workflows