My snippy is running for a very long time. Is this normal?

As this tutorial uses real world data some of the tools can run for quite a while. During a course we can expected longer run times as the Galaxy servers are heavily used. Typically expected runtimes are approximately:

Tool name Runtime
FastQC 2 minutes
MultiQC 5 minutes
Trimmomatic 5 minutes
kraken2 5 - 12 minutes
snippy 15 - 25 minutes
TB Variant Filter 2 minutes
TB-Profiler 5 minutes
Text transformation Less than 1 minute
TB Variant Report 1 minute
JBrowse 5 minutes
Samtools stats (optional) 1 minute
BAM Coverage plotter (optional) 1 minute
Still have questions?
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Want to embed this snippet (FAQ) in your GTN Tutorial?
{% snippet  topics/variant-analysis/tutorials/tb-variant-analysis/faqs/ %}