My snippy is running for a very long time. Is this normal?
Peter van HeusdenAs this tutorial uses real world data some of the tools can run for quite a while. During a course we can expected longer run times as the Galaxy servers are heavily used. Typically expected runtimes are approximately:
| Tool name | Runtime |
|---|---|
| FastQC | 2 minutes |
| MultiQC | 5 minutes |
| Trimmomatic | 5 minutes |
| kraken2 | 5 - 12 minutes |
| snippy | 15 - 25 minutes |
| TB Variant Filter | 2 minutes |
| TB-Profiler | 5 minutes |
| Text transformation | Less than 1 minute |
| TB Variant Report | 1 minute |
| JBrowse | 5 minutes |
| Samtools stats (optional) | 1 minute |
| BAM Coverage plotter (optional) | 1 minute |
Still have questions?
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{% snippet topics/variant-analysis/tutorials/tb-variant-analysis/faqs/runtime.md %}