As part of the work of BeYond COVID, we have developed a new integration between the MINERVA Platform’s COVID-19 Disease Map and Galaxy! Datasets created within Galaxy can now be seamlessly visualized in the MINERVA Platform, allowing you to explore your data in the context of the COVID-19 Disease Map.
This work generated a number of brand new WorkflowHub Workflows, which can now be launched more easily than ever in the GTN:
Hands On: Importing and Launching a WorkflowHub.eu Workflow
Click on galaxy-workflows-activityWorkflows in the Galaxy activity bar (on the left side of the screen, or in the top menu bar of older Galaxy instances). You will see a list of all your workflows
Click on galaxy-uploadImport at the top-right of the screen
On the new page, select the GA4GH servers tab, and configure the GA4GH Tool Registry Server (TRS) Workflow Search interface as follows:
Select the version you would like to galaxy-upload import
The workflow will be imported to your list of workflows. Note that it will also carry a little blue-white shield icon next to its name, which indicates that this is an original workflow version imported from a TRS server. If you ever modify the workflow with Galaxy’s workflow editor, it will lose this indicator.
Below is a short video showing the entire uncomplicated procedure:
Video: Importing via search from WorkflowHub
Hands On: Importing and Launching a WorkflowHub.eu Workflow
Click on galaxy-workflows-activityWorkflows in the Galaxy activity bar (on the left side of the screen, or in the top menu bar of older Galaxy instances). You will see a list of all your workflows
Click on galaxy-uploadImport at the top-right of the screen
On the new page, select the GA4GH servers tab, and configure the GA4GH Tool Registry Server (TRS) Workflow Search interface as follows:
Select the version you would like to galaxy-upload import
The workflow will be imported to your list of workflows. Note that it will also carry a little blue-white shield icon next to its name, which indicates that this is an original workflow version imported from a TRS server. If you ever modify the workflow with Galaxy’s workflow editor, it will lose this indicator.
Below is a short video showing the entire uncomplicated procedure:
Video: Importing via search from WorkflowHub
And a few new GTN features like the ability to embed a workflow visualisation directly into a tutorial.
Go check it out!
Thanks to the efforts undertaken in the
EuroScienceGateway project, Galaxy
now offers integration with Onedata. It can be used as
a remote source for data import/export (a.k.a. Files Source Plugin) and as
a storage location for Galaxy datasets (an Object Store).
The integration includes
BYOD
(Bring Your Own Data) and
BYOS
(Bring Your Own Storage) templates.
@gtn:hexylena, as a key member of the phenomenally creative and passionate Galaxy Training Network team alongside @gtn:shiltemann and @gtn:bebatut, pioneered the concept of Training Infrastructure. In a world dominated by clunky virtual learning environments and expensive software, she built an open-source system that could seamlessly support individual users, trainers, and contributors across diverse disciplines and expertise levels.
With a huge thanks to ELIXIR-UK’s DaSH Fellowship funding, we are delighted to present our new Learning Pathway, “Bioinformatics Projects: Using deconvolution to get new insights from old bulk RNA-seq”.
We held our second 🖖🏾SPOC CoFest, in the great tradition of the excellent CoFests organised in the GTN that welcomed @gtn:nomadscientist and many others into the community.
Helena Rasche
Marek Ostaszewski
Matti Hoch
