As part of the work of BeYond COVID, we have developed a new integration between the MINERVA Platform’s COVID-19 Disease Map and Galaxy! Datasets created within Galaxy can now be seamlessly visualized in the MINERVA Platform, allowing you to explore your data in the context of the COVID-19 Disease Map.
This work generated a number of brand new WorkflowHub Workflows, which can now be launched more easily than ever in the GTN:
Hands-on: Importing and Launching a WorkflowHub.eu Workflow
WorkflowHub is a workflow management system which allows workflows to be FAIR (Findable, Accessible, Interoperable, and Reusable), citable, have managed metadata profiles, and be openly available for review and analytics.
Ensure that you are logged in to your Galaxy account.
Click on the Workflow menu, located in the top bar.
Click on the Import button, located in the right corner.
In the section “Import a Workflow from Configured GA4GH Tool Registry Servers (e.g. Dockstore)”, click on Search form.
In the TRS Server: workflowhub.eu menu you should type name:"mRNA-Seq BY-COVID Pipeline: Counts"
Click on the desired workflow, and finally select the latest available version.
After that, the imported workflows will appear in the main workflow menu. In order to run the workflow, just need to click in the workflow-runRun workflow icon.
Below is a short video showing this uncomplicated procedure:
Video: Importing from WorkflowHub
Hands-on: Importing and Launching a WorkflowHub.eu Workflow
WorkflowHub is a workflow management system which allows workflows to be FAIR (Findable, Accessible, Interoperable, and Reusable), citable, have managed metadata profiles, and be openly available for review and analytics.
Ensure that you are logged in to your Galaxy account.
Click on the Workflow menu, located in the top bar.
Click on the Import button, located in the right corner.
In the section “Import a Workflow from Configured GA4GH Tool Registry Servers (e.g. Dockstore)”, click on Search form.
In the TRS Server: workflowhub.eu menu you should type name:"mRNA-Seq BY-COVID Pipeline: Analysis"
Click on the desired workflow, and finally select the latest available version.
After that, the imported workflows will appear in the main workflow menu. In order to run the workflow, just need to click in the workflow-runRun workflow icon.
Below is a short video showing this uncomplicated procedure:
Video: Importing from WorkflowHub
And a few new GTN features like the ability to embed a workflow visualisation directly into a tutorial.
Go check it out!
Have you wondered how difficult Galaxy is to run? How much time people must spend to run Galaxy?
In February 2024, we collected 9 responses from the Galaxy Small Scale Admin group.
The questions cover various time burdens and technological choices.
The report provides answers to prospective future admins’ most common questions.
17 July 2024
gtn infrastructurenew featureautomation
Since the last time we announced GTN news posting via Google Form, we’ve found that this has been an excellent fit for the community and decided to greatly expand the use of Google Forms for GTN contributions.
We are proud to announce that a new training, explaining the analysis of single cell ATAC-seq data with SnapATAC2 and Scanpy, is now available in the Galaxy Training Network.
Are you interested in training and want to connect with other enthusiastic trainers? Then join the BioNT Community Event & CarpentryConnect - Heidelberg 2024. The Carpentries and other learning communities will meet to network and collaborate during this 3-day event. The GTN will be present with a Poster, Lightning Talks and a Mini-hackathon.
We recently presented the GTN at the 2024 Galaxy Community Conference. This presentation was a summary of the updates and new features that were added to the GTN in the past year.
Helena Rasche
Marek Ostaszewski
Matti Hoch
