Debugging tool errors

Tool stdout/stderr is available in UI under ā€œiā€ icon on history dataset

  1. Set cleanup_job to onsuccess
  2. Cause a job failure
  3. Go to job working directory (find in logs or /data/jobs/<hash>/<job_id>)
  4. Poke around, try running things (srun --pty bash considered useful)

Familiarize yourself with the places Galaxy keeps things

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