Can I use alternative tools for the Quantification step?

There are some alternatives to Salmon for reference transcriptome-based RNA quantification. Kallisto and Sailfish use a similar approach, known as pseudoalignment.

Still have questions?
Gitter Chat Support
Galaxy Help Forum
Want to embed this snippet (FAQ) in your GTN Tutorial?
{% snippet  topics/transcriptomics/tutorials/mirna-target-finder/faqs/ %}
Persistent URL
Resource purlPURL: