New Tutorial: Genome Annotation with Apollo

new tutorial genome-annotation

Posted on: 4 June 2021 purlPURL: https://gxy.io/GTN:N00016

After two years, the Galaxy Genome Annotation team has finally finished their much awaited tutorial on doing Genome Annotation in Galaxy! Genome annotation is a time consuming and largely manual process as it requires the synthesis of a significant amount of varied information to make inferences, a process tha cannot be accomplished without an interactive editor. To support this, Apollo was deployed on UseGalaxy.eu. Over the past two years the GGA project has pushed forward apollo and tooling around it, and it finally culminates in this look at how to annotated your genomes in Apollo.

But genome annotation isn’t just a solitary activity, from bacterial genomes to larger, they require an entire team of people to do the annotation process which is how Apollo further makes this process easy; by acting like a “Google Docs for Genome Annotation”, providing a collaborative, real-time genome annotation framework, entire teams can work together simultaneously with Apollo, analysing their data in Galaxy, and sending the results back to Apollo.

View Material

Recent News

See all news

Galaxy meets Onedata — distributed storage for science

17 March 2025   esg-wp4 esg contributing

Thanks to the efforts undertaken in the EuroScienceGateway project, Galaxy now offers integration with Onedata. It can be used as a remote source for data import/export (a.k.a. Files Source Plugin) and as a storage location for Galaxy datasets (an Object Store). The integration includes BYOD (Bring Your Own Data) and BYOS (Bring Your Own Storage) templates.

An Ode to Helena - from the 🥓Bacon Brigade

7 March 2025   gtn

@gtn:hexylena, as a key member of the phenomenally creative and passionate Galaxy Training Network team alongside @gtn:shiltemann and @gtn:bebatut, pioneered the concept of Training Infrastructure. In a world dominated by clunky virtual learning environments and expensive software, she built an open-source system that could seamlessly support individual users, trainers, and contributors across diverse disciplines and expertise levels.

SPOC HDR UK ELIXIR-UK CoFest 2025: How did it go?

14 February 2025   gtn single-cell

We held our second 🖖🏾SPOC CoFest, in the great tradition of the excellent CoFests organised in the GTN that welcomed @gtn:nomadscientist and many others into the community.