Do the pipelines work with both isolates and direct from raw meat? or only isolate?

The workflow can work with both isolates and raw meat. The workflow is designed to remove hosts before detecting any pathogen, so both isolates and raw meat samples are pre-processed equaliy before the analysis starts.

Still have questions?
Gitter Chat Support
Galaxy Help Forum
Want to embed this snippet (FAQ) in your GTN Tutorial?
{% snippet  topics/microbiome/tutorials/pathogen-detection-from-nanopore-foodborne-data/faqs/ %}
Persistent URL
Resource purlPURL: