The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
See all of the github Pull Requests and github Commits by Bérénice Batut.
[Community Tool Table Generation] Update the process to curate TS filtered community tool table
Add metaproteomics to GTA microbiome track
Fix link to microbiome track
[GTA] Rename microbiome track file and restructure the section
Galaxy Training Academy: Update bacterial genomics track
We love our community reviewing each other's work!
Update biotools
Update tutorial.md
Add metaproteomics per request
broken box
Every 3 months we organise one day dedicated to the GTN community! Thursday, May 20th is the next GTN CoFest. We will be working on the training materials, have discussions with the global Galaxy traning community. Do you teach with Galaxy? Want to learn how to add your tutorial to the GTN? New to the community and just want to learn more? Everybody is welcome!
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| Author(s) |
 
Saskia Hiltemann
Helena Rasche
Bérénice Batut
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Snippets have received an major overhaul! Snippets/FAQs are small reusable bits of training, often answering a single question. In addition to the general Galaxy snippets, we now also support topic-level and tutorial-level FAQs. This will allow contributors to add common questions and answers to their tutorials, which not only can be included in the tutorial text itself, but are also used to autogenerate an FAQ page for the tutorial or topic listing all common questions (and answers).This will be useful both to participants following tutorials via self-study, and also to instructors preparing for a training event.
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| Author(s) |
Bérénice Batut
Wolfgang Maier
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Effectively monitoring global infectious disease crises, such as the COVID-19 pandemic, requires capacity to generate and analyze large volumes of sequencing data in near real time. These data have proven essential for monitoring the emergence and spread of new variants, and for understanding the evolutionary dynamics of the virus.
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| Author(s) |
Bérénice Batut
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As you have probably already seen, a feedback form is embedded on the bottom of each tutorial.
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| Author(s) |
Bérénice Batut
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Do you use Galaxy for Training? Have your say! Please take a few minutes to let us know about your training experiences.
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As part of our work under the Gallantries Grant we are establishing a new topic within the GTN specifically focused on Data Science skills. This topic will include tutorials covering things such as:
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| Author(s) |
Bérénice Batut
Saskia Hiltemann
Helena Rasche
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Our new paper about the Galaxy Training Network has been published this week in Plos Computational Biology: “Galaxy Training: A powerful framework for teaching!”
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| Author(s) |
Bérénice Batut
Engy Nasr
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Food contamination with pathogens are a major burden on our society. Globally, they affect an estimated 600 million people a year and impact socioeconomic development at different levels. These outbreaks are mainly due to Salmonella spp. followed by Campylobacter spp. and Noroviruses.
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| Author(s) |
Helena Rasche
Bérénice Batut
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| Infrastructure |
Helena Rasche |
We know the GTN has a lot of learning materials (400 and counting!) which can make it quite difficult to figure out where to start in some topics.
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| Author(s) |
Helena Rasche
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| Infrastructure |
Saskia Hiltemann
Helena Rasche
Bérénice Batut |
We are happy to report that over the years of our fruitful collaboration with ELIXIR TeSS, all GTN materials should receive a perfect score on the FAIR-Checker.
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| Author(s) |
Bérénice Batut
Helena Rasche
Saskia Hiltemann
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The Galaxy Training Network (GTN) has reached an exciting milestone: our 400th tutorial! This achievement is a testament to the dedication and hard work of our community of educators, researchers, and developers over the last 9 years.
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| Author(s) |
Bérénice Batut
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The GTN hosts its 400th tutorial: Building an amplicon sequence variant (ASV) table from 16S data using DADA2
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| Author(s) |
Saskia Hiltemann
Helena Rasche
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| Infrastructure |
Saskia Hiltemann
Helena Rasche
Bérénice Batut |
We recently presented the GTN at the 2024 Galaxy Community Conference. This presentation was a summary of the updates and new features that were added to the GTN in the past year.
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Gallantries
IFB
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Jennifer Hillman-Jackson
Delphine Lariviere
Anna Syme
Maria Doyle
Anthony Bretaudeau
Yvan Le Bras
Fotis E. Psomopoulos
The Carpentries