Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Creation of an interactive Galaxy tools table for your community
Community SIG
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena Rasche

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

orcid logoJohn Davis avatar John Davisorcid logoJohan Gustafsson avatar Johan GustafssonYouri Hoogstrate avatar Youri HoogstrateMatthias Bernt avatar Matthias BerntLoraine Guéguen avatar Loraine Guéguenorcid logoSaskia Hiltemann avatar Saskia HiltemannAssunta DeSanto avatar Assunta DeSantoDave B. avatar Dave B.Gildas Le Corguillé avatar Gildas Le CorguilléStéphanie Legras avatar Stéphanie LegrasEstelle Ancelet avatar Estelle AnceletClare Sloggett avatar Clare SloggettSimon Bray avatar Simon BrayHervé Ménager avatar Hervé MénagerDannon Baker avatar Dannon BakerAysam Guerler avatar Aysam Guerlerorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoClemens Blank avatar Clemens Blankorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoJohn Chilton avatar John ChiltonNitesh Turaga avatar Nitesh Turagaorcid logoPaul Zierep avatar Paul Ziereporcid logoHelena Rasche avatar Helena Rascheorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoBjörn Grüning avatar Björn Grüningorcid logoBérénice Batut avatar Bérénice BatutLain Pavot avatar Lain PavotCyril Monjeaud avatar Cyril Monjeaudorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoMartin Čech avatar Martin Čechorcid logoYvan Le Bras avatar Yvan Le BrasRoss Lazarus avatar Ross LazarusErik Schill avatar Erik Schillorcid logoCameron Hyde avatar Cameron Hyde

Funders

This material was funded by: