Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

For any question or discussions related to this topic, or to connect with others in the community, please visit the community chat:

  Community Matrix Chat

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

Follow topic updates with our RSS Feed

Community Resources

Community Home Maintainer Home

Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena Rasche

Contributors

This material was contributed to by:

Dannon Baker avatar Dannon BakerYouri Hoogstrate avatar Youri Hoogstrateorcid logoClemens Blank avatar Clemens BlankAssunta DeSanto avatar Assunta DeSantoHervé Ménager avatar Hervé MénagerErik Schill avatar Erik SchillGildas Le Corguillé avatar Gildas Le Corguilléorcid logoJohn Chilton avatar John ChiltonSimon Bray avatar Simon Brayorcid logoCameron Hyde avatar Cameron HydeCyril Monjeaud avatar Cyril Monjeaudorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoNate Coraor avatar Nate CoraorLoraine Guéguen avatar Loraine Guéguenorcid logoHelena Rasche avatar Helena Rascheorcid logoJohn Davis avatar John DavisLain Pavot avatar Lain PavotMarie Josse avatar Marie Josseorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoSaskia Hiltemann avatar Saskia HiltemannAysam Guerler avatar Aysam GuerlerRoss Lazarus avatar Ross LazarusNitesh Turaga avatar Nitesh TuragaClare Sloggett avatar Clare Sloggettorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoWendi Bacon avatar Wendi Baconorcid logoBjörn Grüning avatar Björn Grüningorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoJohan Gustafsson avatar Johan GustafssonDave B. avatar Dave B.orcid logoAnthony Bretaudeau avatar Anthony BretaudeauStéphanie Legras avatar Stéphanie Legrasorcid logoMartin Čech avatar Martin ČechMatthias Bernt avatar Matthias BerntEstelle Ancelet avatar Estelle Anceletorcid logoBérénice Batut avatar Bérénice Batutorcid logoPaul Zierep avatar Paul Zierep

Funding

These individuals or organisations provided funding support for the development of this resource