Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance
storage

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

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Contributors

This material was contributed to by:

Matthias Bernt avatar Matthias BerntLain Pavot avatar Lain PavotNitesh Turaga avatar Nitesh Turagaorcid logoJohan Gustafsson avatar Johan GustafssonStéphanie Legras avatar Stéphanie Legrasorcid logoHelena Rasche avatar Helena Rascheorcid logoJohn Davis avatar John DavisHervé Ménager avatar Hervé MénagerWilliam Durand avatar William Durandorcid logoWendi Bacon avatar Wendi Baconorcid logoAlex Ostrovsky avatar Alex OstrovskyErik Schill avatar Erik Schillorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoPaul Zierep avatar Paul Ziereporcid logoNicola Soranzo avatar Nicola SoranzoLoraine Guéguen avatar Loraine GuéguenAssunta DeSanto avatar Assunta DeSantoorcid logoCameron Hyde avatar Cameron Hydeorcid logoClemens Blank avatar Clemens BlankClare Sloggett avatar Clare SloggettRoss Lazarus avatar Ross LazarusGildas Le Corguillé avatar Gildas Le Corguilléorcid logoJohn Chilton avatar John Chiltonorcid logoNate Coraor avatar Nate Coraororcid logoBjörn Grüning avatar Björn Grüningorcid logoMartin Čech avatar Martin Čechorcid logoCristóbal Gallardo avatar Cristóbal GallardoCyril Monjeaud avatar Cyril MonjeaudNiall Beard avatar Niall BeardEstelle Ancelet avatar Estelle AnceletDave B. avatar Dave B.orcid logoGianmauro Cuccuru avatar Gianmauro CuccuruAysam Guerler avatar Aysam Guerlerorcid logoBérénice Batut avatar Bérénice Batutorcid logoSaskia Hiltemann avatar Saskia HiltemannMarie Josse avatar Marie JosseSimon Bray avatar Simon Brayorcid logoArmin Dadras avatar Armin Dadrasorcid logoYvan Le Bras avatar Yvan Le BrasDannon Baker avatar Dannon BakerYouri Hoogstrate avatar Youri Hoogstrateorcid logoŁukasz Opioła avatar Łukasz Opioła

Funding

These individuals or organisations provided funding support for the development of this resource

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de.NBI
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ELIXIR Europe
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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