Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

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Contributors

This material was contributed to by:

Katherine Cox avatar Katherine Coxorcid logoHelena Rasche avatar Helena RascheSimon Bray avatar Simon Brayorcid logoLaura Leroi avatar Laura LeroiJoachim Wolff avatar Joachim WolffAva Hoffman avatar Ava HoffmanElizabeth Humphries avatar Elizabeth HumphriesFrederick Tan avatar Frederick Tanorcid logoErwan Corre avatar Erwan Correorcid logoColine Royaux avatar Coline Royauxorcid logoBjörn Grüning avatar Björn Grüningorcid logoMaria Doyle avatar Maria DoyleAnup Kumar avatar Anup KumarVerena Moosmann avatar Verena Moosmannorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoCameron Hyde avatar Cameron Hydeorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoAnne Fouilloux avatar Anne FouillouxNatalie Kucher avatar Natalie Kucherorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoTeresa Müller avatar Teresa MüllerWilliam Durand avatar William Durandorcid logoBérénice Batut avatar Bérénice Batutorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoMateo Boudet avatar Mateo BoudetRobert Meller avatar Robert MellerEric Tvedte avatar Eric Tvedteorcid logoClea Siguret avatar Clea Siguretorcid logoAnthony Bretaudeau avatar Anthony BretaudeauCandace Savonen avatar Candace Savonenorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoSaskia Hiltemann avatar Saskia HiltemannElischa Berger avatar Elischa BergerSwathi Nataraj avatar Swathi NatarajMatthias Bernt avatar Matthias Bernt

Funding

These individuals or organisations provided funding support for the development of this resource

References