Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

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Contributors

This material was contributed to by:

orcid logoCameron Hyde avatar Cameron Hydeorcid logoHelena Rasche avatar Helena Rascheorcid logoNicola Soranzo avatar Nicola SoranzoElischa Berger avatar Elischa Bergerorcid logoMaria Doyle avatar Maria Doyleorcid logoAnne Fouilloux avatar Anne FouillouxAnup Kumar avatar Anup Kumarorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoAnthony Bretaudeau avatar Anthony BretaudeauAva Hoffman avatar Ava HoffmanNatalie Kucher avatar Natalie Kucherorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoBérénice Batut avatar Bérénice BatutEric Tvedte avatar Eric Tvedteorcid logoErwan Corre avatar Erwan Correorcid logoColine Royaux avatar Coline RoyauxVerena Moosmann avatar Verena Moosmannorcid logoDeepti Varshney avatar Deepti VarshneyMatthias Bernt avatar Matthias Berntorcid logoSaskia Hiltemann avatar Saskia HiltemannRobert Meller avatar Robert MellerSimon Bray avatar Simon Brayorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoCristóbal Gallardo avatar Cristóbal GallardoKatherine Cox avatar Katherine CoxCandace Savonen avatar Candace SavonenSwathi Nataraj avatar Swathi Natarajorcid logoBjörn Grüning avatar Björn GrüningJoachim Wolff avatar Joachim WolffElizabeth Humphries avatar Elizabeth HumphriesFrederick Tan avatar Frederick Tanorcid logoTeresa Müller avatar Teresa MüllerWilliam Durand avatar William Durandorcid logoClea Siguret avatar Clea Siguretorcid logoMateo Boudet avatar Mateo Boudetorcid logoLaura Leroi avatar Laura Leroi

Funding

These individuals or organisations provided funding support for the development of this resource

References