Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

orcid logoAnika Erxleben avatar Anika Erxlebenorcid logoCristóbal Gallardo avatar Cristóbal GallardoElizabeth Humphries avatar Elizabeth HumphriesSwathi Nataraj avatar Swathi NatarajVerena Moosmann avatar Verena MoosmannAnup Kumar avatar Anup KumarNatalie Kucher avatar Natalie Kucherorcid logoColine Royaux avatar Coline Royauxorcid logoSaskia Hiltemann avatar Saskia HiltemannJoachim Wolff avatar Joachim Wolfforcid logoAnthony Bretaudeau avatar Anthony BretaudeauWilliam Durand avatar William Durandorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoMaria Doyle avatar Maria Doyleorcid logoClea Siguret avatar Clea Siguretorcid logoBérénice Batut avatar Bérénice BatutSimon Bray avatar Simon Brayorcid logoBjörn Grüning avatar Björn Grüningorcid logoErwan Corre avatar Erwan Correorcid logoWolfgang Maier avatar Wolfgang MaierEric Tvedte avatar Eric TvedteRobert Meller avatar Robert Mellerorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoLaura Leroi avatar Laura LeroiCandace Savonen avatar Candace Savonenorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoDeepti Varshney avatar Deepti VarshneyAva Hoffman avatar Ava HoffmanMatthias Bernt avatar Matthias BerntElischa Berger avatar Elischa BergerFrederick Tan avatar Frederick Tanorcid logoTeresa Müller avatar Teresa Müllerorcid logoCameron Hyde avatar Cameron Hydeorcid logoHelena Rasche avatar Helena Rascheorcid logoAnne Fouilloux avatar Anne FouillouxKatherine Cox avatar Katherine Coxorcid logoMateo Boudet avatar Mateo Boudet

Funding

These individuals or organisations provided funding support for the development of this resource

References