Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

orcid logoBjörn Grüning avatar Björn Grüningorcid logoLaura Leroi avatar Laura Leroiorcid logoHelena Rasche avatar Helena RascheAnup Kumar avatar Anup KumarWilliam Durand avatar William Durandorcid logoErwan Corre avatar Erwan Correorcid logoClea Siguret avatar Clea Siguretorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoMaria Doyle avatar Maria DoyleRobert Meller avatar Robert Mellerorcid logoBérénice Batut avatar Bérénice Batutorcid logoCristóbal Gallardo avatar Cristóbal GallardoFrederick Tan avatar Frederick Tanorcid logoAnthony Bretaudeau avatar Anthony BretaudeauElischa Berger avatar Elischa Bergerorcid logoAnne Fouilloux avatar Anne FouillouxSimon Bray avatar Simon BrayMatthias Bernt avatar Matthias Berntorcid logoTeresa Müller avatar Teresa MüllerElizabeth Humphries avatar Elizabeth HumphriesAva Hoffman avatar Ava HoffmanNatalie Kucher avatar Natalie KucherKatherine Cox avatar Katherine Coxorcid logoMateo Boudet avatar Mateo Boudetorcid logoWolfgang Maier avatar Wolfgang MaierEric Tvedte avatar Eric Tvedteorcid logoColine Royaux avatar Coline Royauxorcid logoAnika Erxleben avatar Anika ErxlebenJoachim Wolff avatar Joachim WolffVerena Moosmann avatar Verena Moosmannorcid logoCameron Hyde avatar Cameron Hydeorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoDeepti Varshney avatar Deepti VarshneyCandace Savonen avatar Candace SavonenSwathi Nataraj avatar Swathi Natarajorcid logoStéphanie Robin avatar Stéphanie Robin

Funding

These individuals or organisations provided funding support for the development of this resource

References