Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Contributors

This material was contributed to by:

Nicola Soranzo

Erwan Corre

Anika Erxleben

William Durand

Ekaterina Polkh

Jasper Ouwerkerk

Simon Bray

Kenji Fujihara

Torsten Seemann

Nathan Dunn

Esteban Perez-Wohlfeil

Miaomiao Zhou

Laura Leroi

Niall Beard

Bazante Sanders

Jonathan Kreplak

Anna Syme

Guillaume Gautreau

Anthony Bretaudeau

Paul Zierep

Teresa Müller

Cristóbal Gallardo

Twishi Gulati

Saskia Hiltemann

Stéphanie Robin

Helena Rasche

Deepti Varshney

Anton Nekrutenko

Mateo Boudet

Delphine Lariviere

Romane LIBOUBAN

Simon Gladman

Björn Grüning

Felicitas Kindel

Hélène Chiapello

Valentin Loux

Gildas Le Corguillé

Maria Doyle

Bérénice Batut

Alexandre Cormier

Funding

These individuals or organisations provided funding support for the development of this resource

Avans

IFB

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

ELIXIR Europe

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ABRomics