Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Jasper Ouwerkerk

Delphine Lariviere

Niall Beard

Gildas Le Corguillé

Miaomiao Zhou

Jonathan Kreplak

Anton Nekrutenko

Bérénice Batut

Guillaume Gautreau

Tristan Reynolds

Hélène Chiapello

Paul Zierep

Björn Grüning

Ekaterina Polkh

Simon Bray

Felicitas Kindel

Romane LIBOUBAN

Maria Doyle

Nathan Dunn

Nicola Soranzo

Torsten Seemann

Anna Syme

Stéphanie Robin

Erwan Corre

Saim Momin

Laura Leroi

Twishi Gulati

Alexandre Cormier

Mateo Boudet

Deepti Varshney

Kenji Fujihara

Helena Rasche

Bazante Sanders

Teresa Müller

Anika Erxleben

Niklas Mayle

Cristóbal Gallardo

William Durand

Esteban Perez-Wohlfeil

Saskia Hiltemann

Simon Gladman

Anthony Bretaudeau

Valentin Loux

Funding

These individuals or organisations provided funding support for the development of this resource

Australian BioCommons

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

IFB

The University of Melbourne

Avans

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

ELIXIR Europe

Melbourne Bioinformatics

ABRomics