Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Simon Gladman

Anthony Bretaudeau

Contributors

This material was contributed to by:

Jasper Ouwerkerk

Björn Grüning

Gildas Le Corguillé

Maria Doyle

Torsten Seemann

Saskia Hiltemann

Anton Nekrutenko

Alexandre Cormier

Romane LIBOUBAN

Nicola Soranzo

Deepti Varshney

Felicitas Kindel

Delphine Lariviere

Laura Leroi

Mateo Boudet

Esteban Perez-Wohlfeil

Simon Bray

Anika Erxleben

Niall Beard

Helena Rasche

Erwan Corre

Teresa Müller

Cristóbal Gallardo

Miaomiao Zhou

Jonathan Kreplak

Bérénice Batut

Bazante Sanders

Ekaterina Polkh

Nathan Dunn

Paul Zierep

Twishi Gulati

William Durand

Anna Syme

Anthony Bretaudeau

Simon Gladman

Stéphanie Robin

Kenji Fujihara

Funding

These individuals or organisations provided funding support for the development of this resource

IFB

Avans

ABRomics

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ELIXIR Europe

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.