Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
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Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Introduction
Start here if you are new to genome annotation in Galaxy.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
|
Introduction to Genome Annotation
|
Prokaryotes
Annotation of prokaryotic genomes.
Eukaryotes
Annotation of eukaryotic genomes.
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Comparative gene analysis in unannotated genomes | |||||
| From small to large-scale genome comparison | |||||
| Pangenome analysis with Roary |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Helena Rasche
Anthony Bretaudeau
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
William Durand
Stéphanie Robin
Romane LIBOUBAN
Torsten Seemann
Helena Rasche
Felicitas Kindel
Saim Momin
Anna Syme
Paul Zierep
Anton Nekrutenko
Niklas Mayle
Anthony Bretaudeau
Mateo Boudet
Miaomiao Zhou
Kenji Fujihara
Gildas Le Corguillé
Solenne Correard
Nathan Dunn
Twishi Gulati
Jasper Ouwerkerk
Delphine Lariviere
Guillaume Gautreau
Donny Vrins
Ekaterina Polkh
Jonathan Kreplak
Teresa Müller
Nicola Soranzo
Valentin Loux
Bazante Sanders
Tristan Reynolds
Björn Grüning
Anika Erxleben
Esteban Perez-Wohlfeil
Simon Gladman
Saskia Hiltemann
Niall Beard
Maria Doyle
Erwan Corre
Deepti Varshney
Cristóbal Gallardo
Laura Leroi
Hélène Chiapello
Simon Bray
Vesselin Baev
Bérénice Batut
Alexandre Cormier
Funding
These individuals or organisations provided funding support for the development of this resource
