Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
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Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Introduction
Start here if you are new to genome annotation in Galaxy.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
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Introduction to Genome Annotation
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Prokaryotes
Annotation of prokaryotic genomes.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Essential genes detection with Transposon insertion sequencing | |||||
| Bacterial Genome Annotation | |||||
| Genome annotation with Prokka | |||||
| Identification of AMR genes in an assembled bacterial genome | |||||
| Refining Genome Annotations with Apollo (prokaryotes) |
Eukaryotes
Annotation of eukaryotic genomes.
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Comparative gene analysis in unannotated genomes | |||||
| From small to large-scale genome comparison | |||||
| Pangenome analysis with Roary |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Helena Rasche
Anthony Bretaudeau
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Anna Syme
Anton Nekrutenko
Anika Erxleben
Twishi Gulati
Torsten Seemann
Jasper Ouwerkerk
Esteban Perez-Wohlfeil
Björn Grüning
Maria Doyle
Felicitas Kindel
Nicola Soranzo
Saim Momin
Ekaterina Polkh
Bérénice Batut
Miaomiao Zhou
Deepti Varshney
Simon Gladman
Bazante Sanders
Saskia Hiltemann
Laura Leroi
Hélène Chiapello
Valentin Loux
Cristóbal Gallardo
Anthony Bretaudeau
Niall Beard
Niklas Mayle
Alexandre Cormier
Kenji Fujihara
Delphine Lariviere
William Durand
Erwan Corre
Jonathan Kreplak
Tristan Reynolds
Guillaume Gautreau
Teresa Müller
Mateo Boudet
Gildas Le Corguillé
Romane LIBOUBAN
Helena Rasche
Simon Bray
Stéphanie Robin
Paul Zierep
Nathan Dunn
Funding
These individuals or organisations provided funding support for the development of this resource
