Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Valentin Loux

Nicola Soranzo

Stéphanie Robin

Romane LIBOUBAN

Simon Gladman

Ekaterina Polkh

Laura Leroi

Torsten Seemann

Helena Rasche

William Durand

Guillaume Gautreau

Saskia Hiltemann

Esteban Perez-Wohlfeil

Simon Bray

Nathan Dunn

Felicitas Kindel

Jasper Ouwerkerk

Teresa Müller

Deepti Varshney

Tristan Reynolds

Twishi Gulati

Gildas Le Corguillé

Maria Doyle

Jonathan Kreplak

Niklas Mayle

Alexandre Cormier

Mateo Boudet

Miaomiao Zhou

Hélène Chiapello

Niall Beard

Anna Syme

Anton Nekrutenko

Paul Zierep

Delphine Lariviere

Bazante Sanders

Björn Grüning

Cristóbal Gallardo

Anika Erxleben

Saim Momin

Kenji Fujihara

Anthony Bretaudeau

Erwan Corre

Bérénice Batut

Funding

These individuals or organisations provided funding support for the development of this resource

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

Avans

IFB

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

The University of Melbourne

ABRomics

Australian BioCommons

Melbourne Bioinformatics

ELIXIR Europe