Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Miaomiao Zhou

William Durand

Bérénice Batut

Saskia Hiltemann

Nathan Dunn

Mateo Boudet

Björn Grüning

Cristóbal Gallardo

Esteban Perez-Wohlfeil

Kenji Fujihara

Gildas Le Corguillé

Laura Leroi

Anthony Bretaudeau

Paul Zierep

Erwan Corre

Guillaume Gautreau

Niall Beard

Anika Erxleben

Anna Syme

Bazante Sanders

Helena Rasche

Twishi Gulati

Ekaterina Polkh

Romane LIBOUBAN

Felicitas Kindel

Simon Bray

Torsten Seemann

Jasper Ouwerkerk

Stéphanie Robin

Alexandre Cormier

Maria Doyle

Valentin Loux

Simon Gladman

Nicola Soranzo

Hélène Chiapello

Teresa Müller

Delphine Lariviere

Jonathan Kreplak

Deepti Varshney

Anton Nekrutenko

Funding

These individuals or organisations provided funding support for the development of this resource

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

Avans

ELIXIR Europe

IFB

ABRomics