Using Galaxy and Managing your Data
A collection of microtutorials explaining various features of the Galaxy user interface and manipulating data within Galaxy.
Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Uploading Data
These tutorials will help you get data into Galaxy, before you analyse it.
Histories
Managing your analysis histories efficiently
| Lesson | Slides | Hands-on | Recordings |
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Searching Your History
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| Understanding Galaxy history system |
Making Data Manageable
Now that you have data in Galaxy, let's make it easier to work with through collections and structured data.
| Lesson | Slides | Hands-on | Recordings |
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Group tags for complex experimental designs
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Name tags for following complex histories
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| Using dataset collections |
Workflows
Using Galaxy workflows to scale analysis
Analysing Data
Some advanced topics in data analysis.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
| InterMine integration with Galaxy | |||
| JupyterLab in Galaxy | |||
| RStudio in Galaxy | |||
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Use Jupyter notebooks in Galaxy
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Download and free up space
Once you are done with your analyses in Galaxy, it's time to download your data and free up space.
| Lesson | Slides | Hands-on | Recordings |
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Downloading and Deleting Data in Galaxy
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| Exporting to Onedata remote |
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
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Accessing IIIF from within Galaxy
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| Getting started with Onedata distributed storage | |||
| Submitting sequence data to ENA |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Jennifer Hillman-Jackson
Delphine Lariviere
Teresa Müller
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Nic Herndon
Avani Khadilkar
Anne Fouilloux
Nadia Goué
Aysam Guerler
Teresa Müller
Anthony Bretaudeau
Armin Dadras
Enis Afgan
Helena Rasche
Łukasz Opioła
Clea Siguret
Yo Yehudi
Mateusz Kuzak
Toby Hodges
Niall Beard
William Durand
Delphine Lariviere
Pavankumar Videm
Lucille Delisle
Laila Los
Boris Depoortere
Anton Nekrutenko
Cristóbal Gallardo
Daniela Schneider
Ahmed Hamid Awan
Bérénice Batut
Daniela Butano
Bert Droesbeke
Mehmet Tekman
Björn Grüning
Lisanna Paladin
Ekaterina Polkh
Oleg Zharkov
Matthias Bernt
Charles Overbeck
Nate Coraor
Miguel Roncoroni
John Chilton
Gildas Le Corguillé
David López
Wolfgang Maier
Bartosz Walkowicz
Beatriz Serrano-Solano
Simon Bray
Adelaide Rhodes
Anup Kumar
Marius van den Beek
Elizabeth Sheets
Maria Doyle
Dave Clements
Nicola Soranzo
Deepti Varshney
Wendi Bacon
Rita Gautschy
Anne Pajon
Simon Gladman
Saskia Hiltemann
Fotis E. Psomopoulos
Martin Čech
Tristan Reynolds
Jon Trow
Yvan Le Bras
Funding
These individuals or organisations provided funding support for the development of this resource
