Using Galaxy and Managing your Data
A collection of microtutorials explaining various features of the Galaxy user interface and manipulating data within Galaxy.
Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Uploading Data
These tutorials will help you get data into Galaxy, before you analyse it.
Histories
Managing your analysis histories efficiently
| Lesson | Slides | Hands-on | Recordings |
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Searching Your History
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| Understanding Galaxy history system |
Making Data Manageable
Now that you have data in Galaxy, let's make it easier to work with through collections and structured data.
| Lesson | Slides | Hands-on | Recordings |
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Group tags for complex experimental designs
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Name tags for following complex histories
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| Using dataset collections |
Workflows
Using Galaxy workflows to scale analysis
Analysing Data
Some advanced topics in data analysis.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
| InterMine integration with Galaxy | |||
| JupyterLab in Galaxy | |||
| RStudio in Galaxy | |||
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Use Jupyter notebooks in Galaxy
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Download and free up space
Once you are done with your analyses in Galaxy, it's time to download your data and free up space.
| Lesson | Slides | Hands-on | Recordings |
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Downloading and Deleting Data in Galaxy
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| Exporting to Onedata remote |
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
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Accessing IIIF from within Galaxy
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| Getting started with Onedata distributed storage | |||
| Submitting sequence data to ENA |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Jennifer Hillman-Jackson
Delphine Lariviere
Teresa Müller
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Bert Droesbeke
Charles Overbeck
Simon Bray
Saskia Hiltemann
Simon Gladman
Laila Los
Clea Siguret
Bartosz Walkowicz
Maria Doyle
Delphine Lariviere
Fotis E. Psomopoulos
Mehmet Tekman
Enis Afgan
Oleg Zharkov
Anup Kumar
Niall Beard
Marius van den Beek
Rita Gautschy
Miguel Roncoroni
Łukasz Opioła
Björn Grüning
Tristan Reynolds
Jon Trow
Lucille Delisle
Matthias Bernt
Deepti Varshney
Ekaterina Polkh
Ahmed Hamid Awan
John Chilton
Daniela Schneider
Yo Yehudi
Teresa Müller
Adelaide Rhodes
Martin Čech
Dave Clements
Pavankumar Videm
Nadia Goué
Bérénice Batut
Anton Nekrutenko
Nate Coraor
Boris Depoortere
Wolfgang Maier
Anne Pajon
Toby Hodges
Lisanna Paladin
Yvan Le Bras
Wendi Bacon
Gildas Le Corguillé
Beatriz Serrano-Solano
Anthony Bretaudeau
David López
Helena Rasche
Daniela Butano
Elizabeth Sheets
Aysam Guerler
Mateusz Kuzak
Cristóbal Gallardo
William Durand
Anne Fouilloux
Avani Khadilkar
Nic Herndon
Armin Dadras
Nicola Soranzo
Funding
These individuals or organisations provided funding support for the development of this resource
