The tutorial uses the normalised count table for visualisation. What about using VST normalised counts or rlog normalised counts?

Authors:

this depends on what you would like to do with the table. The DESeq2 wrapper in Galaxy can output all of these, and there is a nice discussion in the DESeq2 vignette about this topic.

Persistent URL

Resource PURL: https://gxy.io/GTN:F00333

Still have questions?

Gitter Chat Support

Galaxy Help Forum

Want to embed this snippet (FAQ) in your GTN Tutorial?

{% snippet  topics/transcriptomics/tutorials/ref-based/faqs/deseq2.md %}

See other uses

Search on GitHub (must be logged in)