Galaxy Server administration

Here you can learn everything you need to become a Pro Galaxy Administrator! These resources cover everything from setup, to configuration, to monitoring, to customisation.

Material

Core

These are the core, foundational topics for the majority of administration in Galaxy.

Jobs & Scheduling

Learn how to use DRMAA and other resources to schedule your jobs on clusters

Data Management & Reference Data

Manage data like a pro: tips on scaling to 1PB and more.

Further Learning

These topics will let you further expand your knowledge. They all build upon what you learned in the core topics, and many expect that you have a setup identical to the one started in the core trainings.

Running Galaxy on the Cloud

If acronyms like EKS, EC2, GCP, ECS, K8S mean anything to you, then you've found where your home! Run Galaxy on someone else's computer with Cloud based tutorials

Maintaining a Production Galaxy

Deployed Galaxy? Now what? All of the knowledge you need to maintain it long term.

Monitoring

Monitor Galaxy like UseGalaxy.eu, learn the ins and outs of monitoring

Deprecated Tutorials

Please do not run these. They are outdated and for historical, archival purposes only.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Nate Coraor

Björn Grüning

Martin Čech

Mira Kuntz

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Enis Afgan

Catherine Bromhead

Simon Gladman

Torfinn Nome

Helena Rasche

Tomas Klingström

John Chilton

Edwin den Haas

Nicola Soranzo

Yvan Le Bras

Matthias Bernt

Abdulrahman Azab

Bartosz Walkowicz

Bérénice Batut

Marius van den Beek

Daniel Blankenberg

Łukasz Opioła

Niall Beard

Martin Čech

Dawa Ometto

Anthony Bretaudeau

Anne Fouilloux

Armin Dadras

Nuwan Goonasekera

Dave B.

Vlad Visan

Lucille Delisle

Kweyakie Afi Blebo

Gildas Le Corguillé

Mirela Minkova

Mira Kuntz

Saskia Hiltemann

Björn Grüning

Marie Josse

Hans-Rudolf Hotz

Cristóbal Gallardo

Valentin Marcon

John Davis

Gianmauro Cuccuru

Peter van Heusden

Paul De Geest

Mélanie Petera

Alex Mahmoud

Tunc Kayikcioglu

José Manuel Domínguez

Nate Coraor

Laila Los

Pablo Moreno

Funding

These individuals or organisations provided funding support for the development of this resource

Australian BioCommons

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

Fair-Ease

FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.

ELIXIR Europe

SURF

UFR

Melbourne Bioinformatics

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

de.NBI

The University of Melbourne

CINECA