Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
Mass spectrometry imaging: Finding differential analytes
Mass spectrometry: GC-MS analysis with the metaMS package
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
Mass spectrometry: LC-MS analysis
Mass spectrometry: LC-MS data processing
Mass spectrometry: LC-MS preprocessing with XCMS
Molecular formula assignment and mass recalibration with MFAssignR package
Predicting EI+ mass spectra with QCxMS

Frequently Asked Questions

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le CorguilléMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie Föll

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Contributors

This material was contributed to by:

orcid logoYann Guitton avatar Yann GuittonSimeon Schum avatar Simeon SchumCécile Canlet avatar Cécile Canletorcid logoHelge Hecht avatar Helge Hechtorcid logoMelanie Föll avatar Melanie Föllorcid logoHelena Rasche avatar Helena Rascheorcid logoCristóbal Gallardo avatar Cristóbal GallardoJean-François Martin avatar Jean-François Martinorcid logoJulia Jakiela avatar Julia Jakielaorcid logoMatej Troják avatar Matej TrojákMaren Stillger avatar Maren Stillgerorcid logoSaskia Hiltemann avatar Saskia HiltemannSimon Bray avatar Simon BrayMélanie Petera avatar Mélanie Peteraorcid logoBjörn Grüning avatar Björn GrüningWorkflow4Metabolomics core team avatar Workflow4Metabolomics core teamJulien Saint-Vanne avatar Julien Saint-Vanneorcid logoBérénice Batut avatar Bérénice Batutorcid logoMaxim Skoryk avatar Maxim Skorykorcid logoKristina Gomoryova avatar Kristina GomoryovaGildas Le Corguillé avatar Gildas Le Corguillé

Funding

These individuals or organisations provided funding support for the development of this resource

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RFMF
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ELIXIR Europe
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MetaboHUB
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UFR