Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
Mass spectrometry imaging: Finding differential analytes
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
Mass spectrometry: LC-MS analysis
Mass spectrometry: LC-MS data processing
Mass spectrometry: LC-MS preprocessing with XCMS
Predicting EI+ mass spectra with QCxMS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le CorguilléMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie Föll

Contributors

This material was contributed to by:

orcid logoJulia Jakiela avatar Julia Jakielaorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelge Hecht avatar Helge Hechtorcid logoMaxim Skoryk avatar Maxim SkorykGildas Le Corguillé avatar Gildas Le Corguilléorcid logoHelena Rasche avatar Helena RascheYann Guitton avatar Yann Guittonorcid logoMelanie Föll avatar Melanie Föllorcid logoSaskia Hiltemann avatar Saskia HiltemannSimon Bray avatar Simon Brayorcid logoMatej Troják avatar Matej TrojákMaren Stillger avatar Maren Stillgerorcid logoBjörn Grüning avatar Björn GrüningMélanie Petera avatar Mélanie PeteraJulien Saint-Vanne avatar Julien Saint-VanneWorkflow4Metabolomics core team avatar Workflow4Metabolomics core teamCécile Canlet avatar Cécile CanletJean-François Martin avatar Jean-François Martin

Funding

These individuals or organisations provided funding support for the development of this resource

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UFR
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ELIXIR Europe