Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
Mass spectrometry imaging: Finding differential analytes
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
Mass spectrometry: LC-MS analysis
Mass spectrometry: LC-MS data processing
Mass spectrometry: LC-MS preprocessing with XCMS
Molecular formula assignment and mass recalibration with MFAssignR package
Predicting EI+ mass spectra with QCxMS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le CorguilléMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie Föll

Contributors

This material was contributed to by:

orcid logoMatej Troják avatar Matej Trojákorcid logoHelena Rasche avatar Helena RascheJean-François Martin avatar Jean-François Martinorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelge Hecht avatar Helge HechtGildas Le Corguillé avatar Gildas Le CorguilléSimon Bray avatar Simon Brayorcid logoKristina Gomoryova avatar Kristina GomoryovaCécile Canlet avatar Cécile Canletorcid logoBjörn Grüning avatar Björn GrüningJulien Saint-Vanne avatar Julien Saint-VanneMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie FöllYann Guitton avatar Yann GuittonWorkflow4Metabolomics core team avatar Workflow4Metabolomics core teamorcid logoJulia Jakiela avatar Julia Jakielaorcid logoMaxim Skoryk avatar Maxim SkorykMaren Stillger avatar Maren StillgerSimeon Schum avatar Simeon Schum

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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UFR