Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
Mass spectrometry imaging: Finding differential analytes
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
Mass spectrometry: LC-MS analysis
Mass spectrometry: LC-MS data processing
Mass spectrometry: LC-MS preprocessing with XCMS
Predicting EI+ mass spectra with QCxMS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguillé Mélanie Petera avatar Mélanie Petera orcid logoMelanie Föll avatar Melanie Föll

Contributors

This material was contributed to by:

orcid logoJulia Jakiela avatar Julia Jakiela Workflow4Metabolomics core team avatar Workflow4Metabolomics core team orcid logoMaxim Skoryk avatar Maxim Skoryk Julien Saint-Vanne avatar Julien Saint-Vanne orcid logoBjörn Grüning avatar Björn Grüning orcid logoBérénice Batut avatar Bérénice Batut Maren Stillger avatar Maren Stillger orcid logoSaskia Hiltemann avatar Saskia Hiltemann orcid logoHelge Hecht avatar Helge Hecht Cécile Canlet avatar Cécile Canlet Mélanie Petera avatar Mélanie Petera orcid logoMelanie Föll avatar Melanie Föll Simon Bray avatar Simon Bray orcid logoMatej Troják avatar Matej Troják orcid logoHelena Rasche avatar Helena Rasche Gildas Le Corguillé avatar Gildas Le Corguillé Yann Guitton avatar Yann Guitton Jean-François Martin avatar Jean-François Martin

Funding

These individuals or organisations provided funding support for the development of this resource