Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
metabolomics mass spectrometry imaging imaging
Mass spectrometry imaging: Finding differential analytes
metabolomics mass spectrometry imaging imaging
Mass spectrometry: GC-MS analysis with the metaMS package
metabolomics exposomics gc-ms
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
metabolomics exposomics gc-ms
Mass spectrometry: LC-MS analysis
metabolomics lc-ms
Mass spectrometry: LC-MS data processing
metabolomics lc-ms
Mass spectrometry: LC-MS preprocessing with XCMS
metabolomics lc-ms
Molecular formula assignment and mass recalibration with MFAssignR package
metabolomics exposomics lc-ms gc-ms
Predicting EI+ mass spectra with QCxMS
metabolomics exposomics gc-ms computational-chemistry quantum-chemistry

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

Follow topic updates with our RSS Feed

Community Resources

Community Home Maintainer Home

Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le CorguilléMélanie Pétéra avatar Mélanie Pétéraorcid logoMelanie Föll avatar Melanie Föll

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Workflow4Metabolomics core team avatar Workflow4Metabolomics core teamorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMatej Troják avatar Matej Trojákorcid logoMelanie Föll avatar Melanie Föllorcid logoJulia Jakiela avatar Julia JakielaMaren Stillger avatar Maren Stillgerorcid logoHelena Rasche avatar Helena RascheSimon Bray avatar Simon BrayJulien Saint-Vanne avatar Julien Saint-Vanneorcid logoMaxim Skoryk avatar Maxim Skorykorcid logoKristina Gomoryova avatar Kristina GomoryovaMélanie Pétéra avatar Mélanie Pétéraorcid logoCécile Canlet avatar Cécile Canletorcid logoPavankumar Videm avatar Pavankumar VidemSimeon Schum avatar Simeon Schumorcid logoHelge Hecht avatar Helge Hechtorcid logoYann Guitton avatar Yann Guittonorcid logoBérénice Batut avatar Bérénice Batutorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoBjörn Grüning avatar Björn GrüningJean-François Martin avatar Jean-François MartinGildas Le Corguillé avatar Gildas Le Corguillé

Funding

These individuals or organisations provided funding support for the development of this resource

Logo
UFR
Logo
RFMF
Logo
ELIXIR Europe
Logo
MetaboHUB