Plant lovers are in luck! A new tutorial on this fascinating kingdom has been added to the GTN. It details the necessary steps to identify potential targets of brassinosteroid-induced miRNAs. Brassinosteroids are phytohormones that have the ability to stimulate plant growth and confer resistance against abiotic and biotic stresses. These characteristics have led to great interest in the field of biotechnology due to its potential for increasing agricultural productivity.
Full StoryCristóbal Gallardo
Former Affiliations
Contributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
GitHub Activity
Editorial Roles
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
Tutorials
- Microbiome / 16S Microbial analysis with Nanopore data
- Introduction to Galaxy Analyses / Introduction to Genomics and Galaxy ✍️
- Contributing to the Galaxy Training Material / Principles of learning and how they apply to training and teaching ✍️
- Assembly / Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
- Assembly / Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
- Assembly / ERGA post-assembly QC
- Using Galaxy and Managing your Data / Understanding Galaxy history system 📝
- Single Cell / Analysis of plant scRNA-Seq Data with Scanpy
- Transcriptomics / Genome-wide alternative splicing analysis ✍️
- Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana
- Visualisation / Visualisation with Circos ✍️
Slides
- Sequence analysis / Mapping ✍️
- Assembly / Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
- Transcriptomics / Identification of non-canonical ORFs and their potential biological function ✍️
- Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana
Video Recordings
- Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana 💬
- Assembly / Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads 🗣
- Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana 💬 🗣
- Development in Galaxy / Creating Galaxy tools from Conda Through Deployment 💬 🗣
- Galaxy Server administration / Use Apptainer containers for running Galaxy jobs 💬
News
We are proud to announce that, as result of the collaboration with the Vertebrate Genomes Project (VGP), a new training describing the VGP assembly pipeline is now available in the Galaxy Training Network. The Vertebrate Genomes Project aims to generate high-quality, near-error-free, gap-free, chromosome-level, haplotype-phased, annotated reference genome assemblies for every vertebrate species.
Full StoryAuthor(s) | Cristóbal Gallardo |
The GTN hosts a new training for analyzing alternative splicing at genome-wide scale!
Full Story