Imaging

Image analysis using Galaxy

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Analyse HeLa fluorescence siRNA screen
HeLa
End-to-End Tissue Microarray Image Analysis with Galaxy-ME
Introduction to Image Analysis using Galaxy
HeLa
Nucleoli segmentation and feature extraction using CellProfiler
Object tracking using CellProfiler
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy
Tracking of mitochondria and capturing mitoflashes
bioimaging mitoflash mitochondria
FAIR Bioimage Metadata
fair data management bioimaging
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data
fair data management bioimaging

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

Follow topic updates with our RSS Feed

Community Resources

Community Home Maintainer Home

Editorial Board

This material is reviewed by our Editorial Board:

orcid logoThomas Wollmann avatar Thomas Wollmann

Contributors

This material was contributed to by:

orcid logoLeonid Kostrykin avatar Leonid KostrykinJean-Karim Hériché avatar Jean-Karim Hérichéorcid logoAnne Fouilloux avatar Anne FouillouxYi Sun avatar Yi Sunorcid logoHelena Rasche avatar Helena Rascheorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoJulia Jakiela avatar Julia Jakielaorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoCameron Watson avatar Cameron Watsonorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoRiccardo Massei avatar Riccardo MasseiLaura Cooper avatar Laura Cooperorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoAllison Creason avatar Allison Creasonorcid logoBjörn Grüning avatar Björn Grüningorcid logoThomas Wollmann avatar Thomas Wollmann

Funding

These individuals or organisations provided funding support for the development of this resource

Logo
ELIXIR Europe
Logo
NFDI4Bioimage
Logo
DFG
Logo
DASH UK
This Fellowship was funded through the ELIXIR-UK DaSH project as part of the UKRI Innovation Scholars: Data Science Training in Health and Bioscience call (DaSH). (MR/V038966/1). The project aims to embed Research Data Management (RDM) know-how into UK universities and institutes by producing and delivering training in FAIR data stewardship using ELIXIR-UK knowledge and resources.

References