Cristóbal Gallardo

Former Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Assembly

Tutorials

• Assembly / ERGA post-assembly QC
• Assembly / Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
• Assembly / Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
• Microbiome / 16S Microbial analysis with Nanopore data
• Contributing to the Galaxy Training Material / Principles of learning and how they apply to training and teaching ✍️
• Visualisation / Visualisation with Circos ✍️
• Single Cell / Analysis of plant scRNA-Seq Data with Scanpy
• Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana
• Transcriptomics / Genome-wide alternative splicing analysis ✍️
• Introduction to Galaxy Analyses / Introduction to Genomics and Galaxy ✍️
• Using Galaxy and Managing your Data / Understanding Galaxy history system 📝

Slides

• Assembly / Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
• Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana
• Transcriptomics / Identification of non-canonical ORFs and their potential biological function ✍️
• Sequence analysis / Mapping ✍️

FAQs

• Could I use a different p-adj value for filtering differentially expressed genes?
• Can I use alternative tools for the Quantification step?
• Import workflows from WorkflowHub

Video Recordings

• Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana 💬
• Galaxy Server administration / Use Apptainer containers for running Galaxy jobs 💬
• Assembly / Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads 🗣
• Development in Galaxy / Creating Galaxy tools from Conda Through Deployment 💬 🗣
• Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana 💬 🗣

GitHub Activity

github Issues Reported

65 Merged Pull Requests

See all of the github Pull Requests and github Commits by Cristóbal Gallardo.

• Genome-wide alternative splicing: add slides and fix typos
  transcriptomics
• Learning principles training: fix references
  contributing
• Genome-wide alternative splicing training v.2.0
  review-needed
  transcriptomics
• Add as contributor to Learning principles training
  contributing
• Alternative splicing training: improve introduction
  transcriptomics

Reviewed 74 PRs

We love our community reviewing each other's work!

• Small updates from feedback from the last workshop
  metagenomics
• Update ChIP-Seq tutorial with latest tool versions and links
  epigenetics
• Genome-wide alternative splicing: add slides and fix typos
  transcriptomics
• github Auto Compress Images
• ERGA post-assembly QC training
  template-and-tools
  assembly

News

External Links

Favourite Topics

Favourite Formats