Niall Beard
Contributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
Tutorials
- Microbiome / 16S Microbial Analysis with mothur (extended) 🧐
- Microbiome / Analyses of metagenomics data - The global picture 🧐
- Using Galaxy and Managing your Data / Understanding Galaxy history system 🧐
- Using Galaxy and Managing your Data / Extracting Workflows from Histories 🧐
- Using Galaxy and Managing your Data / Use Jupyter notebooks in Galaxy 🧐
- Using Galaxy and Managing your Data / Using dataset collections 🧐
- Using Galaxy and Managing your Data / Rule Based Uploader: Advanced 🧐
- Galaxy Server administration / Galaxy Database schema 🧐
- Galaxy Server administration / Ansible 🧐
- Galaxy Server administration / Connecting Galaxy to a compute cluster 🧐
- Teaching and Hosting Galaxy training / Set up a Galaxy for Training 🧐
- Ecology / RAD-Seq Reference-based data analysis 🧐
- Ecology / RAD-Seq to construct genetic maps 🧐
- Ecology / RAD-Seq de-novo data analysis 🧐
- Assembly / De Bruijn Graph Assembly 🧐
- Assembly / Making sense of a newly assembled genome 🧐
- Assembly / An Introduction to Genome Assembly 🧐
- Assembly / Unicycler Assembly 🧐
- Sequence analysis / Mapping 🧐
- Statistics and machine learning / Interval-Wise Testing for omics data 🧐
- Epigenetics / Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1) 🧐
- Epigenetics / Identification of the binding sites of the Estrogen receptor 🧐
- Epigenetics / DNA Methylation data analysis 🧐
- Epigenetics / Hi-C analysis of Drosophila melanogaster cells using HiCExplorer 🧐
- Proteomics / Detection and quantitation of N-termini (degradomics) via N-TAILS 🧐
- Proteomics / Label-free versus Labelled - How to Choose Your Quantitation Method 🧐
- Proteomics / Protein FASTA Database Handling 🧐
- Proteomics / Secretome Prediction 🧐
- Proteomics / Metaproteomics tutorial 🧐
- Proteomics / Peptide and Protein ID using SearchGUI and PeptideShaker 🧐
- Proteomics / Peptide and Protein Quantification via Stable Isotope Labelling (SIL) 🧐
- Proteomics / Peptide and Protein ID using OpenMS tools 🧐
- Contributing to the Galaxy Training Material / Creating Interactive Galaxy Tours 🧐
- Contributing to the Galaxy Training Material / Including a new topic 🧐
- Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials 🧐
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line 🧐
- Contributing to the Galaxy Training Material / Creating content in Markdown 🧐
- Contributing to the Galaxy Training Material / Creating a new tutorial 🧐
- Contributing to the Galaxy Training Material / Running the GTN website locally using the command line 🧐
- Contributing to the Galaxy Training Material / Contributing with GitHub via its interface 🧐
- Contributing to the Galaxy Training Material / Generating PDF artefacts of the website 🧐
- Transcriptomics / Differential abundance testing of small RNAs 🧐
- Transcriptomics / De novo transcriptome reconstruction with RNA-Seq 🧐
- Transcriptomics / Reference-based RNA-Seq data analysis 🧐
- Transcriptomics / CLIP-Seq data analysis from pre-processing to motif detection 🧐
- Transcriptomics / Visualization of RNA-Seq results with CummeRbund 🧐
- Transcriptomics / Reference-based RNAseq data analysis (long) 🧐
- Variant Analysis / Calling very rare variants 🧐
- Variant Analysis / Calling variants in non-diploid systems 🧐
- Variant Analysis / Calling variants in diploid systems 🧐
- Variant Analysis / Mapping and molecular identification of phenotype-causing mutations 🧐
- Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease 🧐
- Variant Analysis / Microbial Variant Calling 🧐
- Genome Annotation / Genome annotation with Prokka 🧐
- Genome Annotation / Genome Annotation 🧐
- Development in Galaxy / Data source integration 🧐
- Development in Galaxy / JavaScript plugins 🧐
- Development in Galaxy / Generic plugins 🧐
- Development in Galaxy / Galaxy Webhooks 🧐
- Introduction to Galaxy Analyses / Introduction to Genomics and Galaxy 🧐
- Introduction to Galaxy Analyses / From peaks to genes 🧐
- Introduction to Galaxy Analyses / IGV Introduction 🧐
- Introduction to Galaxy Analyses / NGS data logistics 🧐
- Introduction to Galaxy Analyses / Galaxy Basics for genomics 🧐
Slides
- Galaxy Server administration / User, Role, Group, Quota, and Authentication managment 🧐
- Galaxy Server administration / Connecting Galaxy to a compute cluster 🧐
- Galaxy Server administration / Docker and Galaxy 🧐
- Galaxy Server administration / Server: Other 🧐
- Assembly / De Bruijn Graph Assembly 🧐
- Assembly / An Introduction to Genome Assembly 🧐
- Assembly / Unicycler Assembly 🧐
- Sequence analysis / Mapping 🧐
- Sequence analysis / Quality Control 🧐
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line 🧐
- Contributing to the Galaxy Training Material / Creating Slides 🧐
- Transcriptomics / Visualization of RNA-Seq results with CummeRbund 🧐
- Genome Annotation / Genome annotation with Prokka 🧐
- Development in Galaxy / Scripting Galaxy using the API and BioBlend 🧐
- Development in Galaxy / Galaxy Interactive Tours 🧐
- Development in Galaxy / Tool Shed: sharing Galaxy tools 🧐
- Development in Galaxy / Visualizations: JavaScript Plugins 🧐
- Development in Galaxy / Generic plugins 🧐
- Development in Galaxy / Tool Dependencies and Containers 🧐
- Development in Galaxy / Tool Dependencies and Conda 🧐
- Development in Galaxy / Galaxy Interactive Environments 🧐
- Development in Galaxy / Tool development and integration into Galaxy 🧐
- Development in Galaxy / Galaxy Webhooks 🧐
- Development in Galaxy / Prerequisites for building software/conda packages 🧐
- Development in Galaxy / Galaxy Code Architecture 🧐
GitHub Activity
github Issues Reported
1 Merged Pull Requests
See all of the github Pull Requests and github Commits by Niall Beard.
Reviewed 3 PRs
We love our community reviewing each other's work!
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schema.org annotation: use Course and add more properties
template-and-tools -
Add some more JSON-LD Terms
work-in-progresstemplate-and-tools -
Added schema.org annotations for training materials
