Yvan Le Bras

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Foundations of Data Science
• Ecology
• Sequence analysis
• Introduction to Galaxy and Ecological data analysis
• Gallantries Grant - Intellectual Output 4 - Data analysis and modelling for evidence and hypothesis generation and knowledge discovery

Tutorials

• Development in Galaxy / Galaxy Interactive Tools
• Ecology / Metabarcoding/eDNA through Obitools ✍️
• Ecology / RAD-Seq to construct genetic maps
• Ecology / RAD-Seq de-novo data analysis
• Ecology / Obis marine indicators ✍️
• Ecology / Cleaning GBIF data for the use in Ecology ✍️
• Ecology / Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities ✍️ 📝
• Ecology / Sentinel 2 biodiversity ✍️
• Ecology / Species distribution modeling
• Ecology / QGIS Web Feature Services ✍️
• Ecology / RAD-Seq Reference-based data analysis
• Ecology / Regional GAM
• Ecology / Biodiversity data exploration ✍️
• Ecology / Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS ✍️ 📝
• Ecology / Visualize EBV cube data with Panoply netCDF viewer ✍️
• Ecology / Compute and analyze biodiversity metrics with PAMPA toolsuite ✍️
• Ecology / Ecoregionalization workflow tutorial ⚙️
• Ecology / Champs blocs indicators ✍️
• Ecology / Production d'indicateurs champs de bloc

Slides

• Epigenetics / Introduction to DNA Methylation data analysis
• Variant Analysis / Introduction to Variant analysis

FAQs

• It says I already have an account when registering for ecology.usegalaxy.eu
• Changer le type de données
• Importer via un lien
• Créer un nouvel history
• Launch RStudio
• Stop RStudio

Video Recordings

• Ecology / Metabarcoding/eDNA through Obitools 💬 🗣

GitHub Activity

github Issues Reported

106 Merged Pull Requests

See all of the github Pull Requests and github Commits by Yvan Le Bras.

• Update tutorial.md add tags
  ecology
• Update tuto as Galaxy is not displaying properly file with too many columns
  ecology
• Update tutorial.md add tags, add warning and correct typos
  ecology
• Update tutorial.md to have clean display of csv example files
  ecology
• Update tutorial.md add analysis topic
  ecology

Reviewed 31 PRs

We love our community reviewing each other's work!

• Update tuto as Galaxy is not displaying properly file with too many columns
  ecology
• Add Ecoregionalization_tutorial
  work-in-progress
  template-and-tools
  ecology
• Initiate EML Assembly Line ecology metadata management tutorial
  ecology
• Add ThibaudGlinez as contributor
  template-and-tools
• Update tutorial.md add funding
  ecology

News

External Links

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