Yvan Le Bras

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Foundations of Data Science
• Ecology
• Sequence analysis
• Introduction to Galaxy and Ecological data analysis
• Gallantries Grant - Intellectual Output 4 - Data analysis and modelling for evidence and hypothesis generation and knowledge discovery

Tutorials

• Using Galaxy and Managing your Data / RStudio in Galaxy 🧐
• Galaxy Server administration / Galaxy Monitoring with Reports 🧐
• Ecology / QGIS Web Feature Services ✍️ 🧐
• Ecology / Species distribution modeling ✍️ 🧐
• Ecology / RAD-Seq Reference-based data analysis ✍️ 🧐
• Ecology / Compute and analyze biodiversity metrics with PAMPA toolsuite ✍️ 🧐
• Ecology / Metabarcoding/eDNA through Obitools ✍️ 🧐
• Ecology / Obis marine indicators ✍️ 🧐
• Ecology / RAD-Seq to construct genetic maps ✍️ 🧐
• Ecology / Biodiversity data exploration ✍️ 🧐
• Ecology / Sentinel 2 biodiversity ✍️ 🧐
• Ecology / RAD-Seq de-novo data analysis ✍️ 🧐
• Ecology / Regional GAM ✍️ 🧐
• Ecology / Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities ✍️ 📝 🧐
• Ecology / Visualize EBV cube data with Panoply netCDF viewer ✍️ 🧐
• Ecology / Ecoregionalization workflow tutorial ⚙️ 🧐
• Ecology / Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS ✍️ 📝
• Ecology / Data submission using ENA upload Tool ✍️ ⚙️ 🧐
• Ecology / Cleaning GBIF data for the use in Ecology ✍️ 🧐
• Ecology / Champs blocs indicators ✍️ 🧐
• Climate / Visualize Climate data with Panoply netCDF viewer 🧐
• Climate / Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools 🧐
• Climate / Pangeo Notebook in Galaxy - Introduction to Xarray 🧐
• Epigenetics / ATAC-Seq data analysis 🧐
• FAIR Data, Workflows, and Research / Exporting Workflow Run RO-Crates from Galaxy 🧐
• FAIR Data, Workflows, and Research / Best practices for workflows in GitHub repositories 🧐
• FAIR Data, Workflows, and Research / RO-Crate in Python 🧐
• FAIR Data, Workflows, and Research / Submitting workflows to LifeMonitor 🧐
• Contributing to the Galaxy Training Material / Creating a new tutorial 🧐
• Development in Galaxy / Galaxy Interactive Tools ✍️
• Introduction to Galaxy Analyses / Introduction to Genomics and Galaxy 🧐
• Ecology / Production d'indicateurs champs de bloc ✍️ 🧐

Slides

• Galaxy Server administration / Server: Other 🧐
• Assembly / De Bruijn Graph Assembly 🧐
• Climate / Pangeo ecosystem 101 for everyone 🧐
• Climate / The Pangeo ecosystem 🧐
• Epigenetics / Introduction to DNA Methylation data analysis ✍️
• Variant Analysis / Introduction to Variant analysis ✍️

FAQs

• It says I already have an account when registering for ecology.usegalaxy.eu
• Changer le type de données
• Importer via un lien
• Créer un nouvel history
• Launch RStudio
• Stop RStudio

Video Recordings

• Ecology / Metabarcoding/eDNA through Obitools 💬 🗣

GitHub Activity

github Issues Reported

107 Merged Pull Requests

See all of the github Pull Requests and github Commits by Yvan Le Bras.

• Fix some typos
  ecology
• Update tutorial.md add tags
  ecology
• Update tuto as Galaxy is not displaying properly file with too many columns
  ecology
• Update tutorial.md add tags, add warning and correct typos
  ecology
• Update tutorial.md to have clean display of csv example files
  ecology

Reviewed 32 PRs

We love our community reviewing each other's work!

• Add ENA_Biodiv_submission Tutorial
  template-and-tools
  ecology
• Update tuto as Galaxy is not displaying properly file with too many columns
  ecology
• Add Ecoregionalization_tutorial
  work-in-progress
  template-and-tools
  ecology
• Initiate EML Assembly Line ecology metadata management tutorial
  ecology
• Add ThibaudGlinez as contributor
  template-and-tools

News

External Links

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