Yvan Le Bras

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Foundations of Data Science
• Topic: Ecology
• Topic: Sequence analysis
• Learning Pathway: Introduction to Galaxy and Ecological data analysis
• Learning Pathway: Gallantries Grant - Intellectual Output 4 - Data analysis and modelling for evidence and hypothesis generation and knowledge discovery

Tutorials

• Galaxy Server administration / Galaxy Monitoring with Reports 🧐
• Using Galaxy and Managing your Data / RStudio in Galaxy 🧐
• Ecology / Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities ✍️ 📝 🧐
• Ecology / Phylodiversity analysis quick tutorial ✍️ 🧐
• Ecology / Sentinel 2 biodiversity ✍️ 🧐
• Ecology / Compute and analyze biodiversity metrics with PAMPA toolsuite ✍️ 🧐
• Ecology / RAD-Seq to construct genetic maps ✍️ 🧐
• Ecology / Champs blocs indicators ✍️ 🧐
• Ecology / Visualize EBV cube data with Panoply netCDF viewer ✍️ 🧐
• Ecology / Species distribution modeling ✍️ 🧐
• Ecology / RAD-Seq de-novo data analysis ✍️ 🧐
• Ecology / Regional GAM ✍️ 🧐
• Ecology / Metabarcoding/eDNA through Obitools ✍️ 🧐
• Ecology / Obis marine indicators ✍️ 🧐
• Ecology / Audio data annotation with NEAL (Nature + Energy Audio labeler). ✍️ 🧐
• Ecology / Ecoregionalization workflow tutorial ⚙️ 🧐
• Ecology / Life Traits Ecoregionalization workflow ✍️ 🧐
• Ecology / RAD-Seq Reference-based data analysis ✍️ 🧐
• Ecology / Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS ✍️ 📝
• Ecology / Taxonomic Analysis of eDNA 🧐
• Ecology / Cleaning GBIF data for the use in Ecology ✍️ 🧐
• Ecology / Biodiversity data exploration ✍️ 🧐
• Ecology / Cleaning GBIF data using OpenRefine ✍️ 🧐
• Ecology / QGIS Web Feature Services ✍️ 🧐
• Ecology / Data submission using ENA upload Tool ✍️ ⚙️ 🧐
• Contributing to the Galaxy Training Material / Creating a new tutorial 🧐
• Epigenetics / ATAC-Seq data analysis 🧐
• Climate / Pangeo Notebook in Galaxy - Introduction to Xarray 🧐
• Climate / Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools 🧐
• Climate / Visualize Climate data with Panoply netCDF viewer 🧐
• Introduction to Galaxy Analyses / Introduction to Genomics and Galaxy 🧐
• Development in Galaxy / Galaxy Interactive Tools ✍️
• FAIR Data, Workflows, and Research / RO-Crate in Python 🧐
• FAIR Data, Workflows, and Research / Exporting Workflow Run RO-Crates from Galaxy 🧐
• FAIR Data, Workflows, and Research / Submitting workflows to LifeMonitor 🧐
• FAIR Data, Workflows, and Research / Best practices for workflows in GitHub repositories 🧐
• Ecology / Production d'indicateurs champs de bloc ✍️ 🧐

Slides

• Galaxy Server administration / Server: Other 🧐
• Assembly / De Bruijn Graph Assembly 🧐
• Variant Analysis / Introduction to Variant analysis ✍️
• Epigenetics / Introduction to DNA Methylation data analysis ✍️
• Climate / The Pangeo ecosystem 🧐
• Climate / Pangeo ecosystem 101 for everyone 🧐

FAQs

• It says I already have an account when registering for ecology.usegalaxy.eu
• Changer le type de données
• Importer via un lien
• Créer un nouvel history
• Launch RStudio
• Stop RStudio

Video Recordings

• Ecology / Metabarcoding/eDNA through Obitools 💬 🗣

Events

• Galaxy Ecology training and collabroation fest 🎪

GitHub Activity

github Issues Reported

114 Merged Pull Requests

See all of the github Pull Requests and github Commits by Yvan Le Bras.

• Initiate Galaxy Ecology november event 2025-11-11
  template-and-tools
• Update metadata.yaml to add Galaxy Ecology ref & data access and mngt
  ecology
• Update tutorial.md fix typo.. on the title...
  ecology
• try to rePR phylodiversity tuto
  template-and-tools
  ecology
• Openrefine tuto addition
  template-and-tools
  ecology

Reviewed 41 PRs

We love our community reviewing each other's work!

• Initiate Galaxy Ecology november event 2025-11-11
  template-and-tools
• Add some correction in Neal tutorial
  ecology
• Add NEAL tutorial
  template-and-tools
  ecology
• try to rePR phylodiversity tuto
  template-and-tools
  ecology
• Add EDAM to OBS marine indicators tutorial
  ecology

News

External Links

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