Yvan Le Bras
Affiliations
Contributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
Editorial Roles
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
- Foundations of Data Science
- Ecology
- Sequence analysis
- Introduction to Galaxy and Ecological data analysis
- Gallantries Grant - Intellectual Output 4 - Data analysis and modelling for evidence and hypothesis generation and knowledge discovery
Tutorials
- Contributing to the Galaxy Training Material / Creating a new tutorial 🧐
- Using Galaxy and Managing your Data / RStudio in Galaxy 🧐
- Epigenetics / ATAC-Seq data analysis 🧐
- Ecology / Visualize EBV cube data with Panoply netCDF viewer ✍️ 🧐
- Ecology / Compute and analyze biodiversity metrics with PAMPA toolsuite ✍️ 🧐
- Ecology / QGIS Web Feature Services ✍️ 🧐
- Ecology / Champs blocs indicators ✍️ 🧐
- Ecology / Metabarcoding/eDNA through Obitools ✍️ 🧐
- Ecology / Sentinel 2 biodiversity ✍️ 🧐
- Ecology / Ecoregionalization workflow tutorial ⚙️ 🧐
- Ecology / Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities ✍️ 📝 🧐
- Ecology / RAD-Seq to construct genetic maps ✍️ 🧐
- Ecology / Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS ✍️ 📝
- Ecology / RAD-Seq Reference-based data analysis ✍️ 🧐
- Ecology / Data submission using ENA upload Tool ✍️ ⚙️ 🧐
- Ecology / Regional GAM ✍️ 🧐
- Ecology / Species distribution modeling ✍️ 🧐
- Ecology / Cleaning GBIF data using OpenRefine ✍️ 🧐
- Ecology / Obis marine indicators ✍️ 🧐
- Ecology / Biodiversity data exploration ✍️ 🧐
- Ecology / RAD-Seq de-novo data analysis ✍️ 🧐
- Ecology / Cleaning GBIF data for the use in Ecology ✍️ 🧐
- Galaxy Server administration / Galaxy Monitoring with Reports 🧐
- Climate / Pangeo Notebook in Galaxy - Introduction to Xarray 🧐
- Climate / Visualize Climate data with Panoply netCDF viewer 🧐
- Climate / Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools 🧐
- Introduction to Galaxy Analyses / Introduction to Genomics and Galaxy 🧐
- FAIR Data, Workflows, and Research / Best practices for workflows in GitHub repositories 🧐
- FAIR Data, Workflows, and Research / Exporting Workflow Run RO-Crates from Galaxy 🧐
- FAIR Data, Workflows, and Research / RO-Crate in Python 🧐
- FAIR Data, Workflows, and Research / Submitting workflows to LifeMonitor 🧐
- Development in Galaxy / Galaxy Interactive Tools ✍️
- Ecology / Production d'indicateurs champs de bloc ✍️ 🧐
Slides
- Assembly / De Bruijn Graph Assembly 🧐
- Epigenetics / Introduction to DNA Methylation data analysis ✍️
- Galaxy Server administration / Server: Other 🧐
- Climate / The Pangeo ecosystem 🧐
- Climate / Pangeo ecosystem 101 for everyone 🧐
- Variant Analysis / Introduction to Variant analysis ✍️
FAQs
- It says I already have an account when registering for ecology.usegalaxy.eu
- Changer le type de données
- Importer via un lien
- Créer un nouvel history
- Launch RStudio
- Stop RStudio
Video Recordings
GitHub Activity
github Issues Reported
110 Merged Pull Requests
See all of the github Pull Requests and github Commits by Yvan Le Bras.
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Openrefine tuto addition
template-and-toolsecology -
Update tutorial.md good link ?
fair -
Update ORGANISATIONS.yaml add ASOC Antarctic
template-and-toolsecology -
Fix some typos
ecology -
Update tutorial.md add tags
ecology
Reviewed 33 PRs
We love our community reviewing each other's work!
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Openrefine tuto addition
template-and-toolsecology -
Add ENA_Biodiv_submission Tutorial
template-and-toolsecology -
Update tuto as Galaxy is not displaying properly file with too many columns
ecology -
Add Ecoregionalization_tutorial
work-in-progresstemplate-and-toolsecology -
Initiate EML Assembly Line ecology metadata management tutorial
ecology
News
External Links
Favourite Topics
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