Using Galaxy and Managing your Data

A collection of microtutorials explaining various features of the Galaxy user interface and manipulating data within Galaxy.

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.


Uploading Data

These tutorials will help you get data into Galaxy, before you analyse it.

Lesson Slides Hands-on Recordings Galaxy servers
Getting data into Galaxy
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Rule Based Uploader tutorial
  • Rule Based Uploader: Advanced tutorial
    SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis plain text tutorial
  • Galaxy Features

    Learn how to use Galaxy efficiently

    Lesson Slides Hands-on Recordings Galaxy servers
    Extracting Workflows from Histories tutorial
    Galaxy workflows in Dockstore
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    Searching Your History
    Understanding Galaxy history system

    Making Data Manageable

    Now that you have data in Galaxy, let's make it easier to work with through collections and structured data.

    Lesson Slides Hands-on Recordings Galaxy servers
    Group tags for complex experimental designs
    Multisample Analysis tutorial
    Name tags for following complex histories
    Using dataset collections tutorial
  • Analysing Data

    Some advanced topics in data analyis.

    Lesson Slides Hands-on Recordings Galaxy servers
    Automating Galaxy workflows using the command line tutorial
  • Creating, Editing and Importing Galaxy Workflows tutorial
    InterMine integration with Galaxy
    JupyterLab in Galaxy tutorial
    RStudio in Galaxy tutorial
    Use Jupyter notebooks in Galaxy
    Using Workflow Parameters tutorial

    Download and free up space

    Once you are done with your analyses in Galaxy, it's time to download your data and free up space.

    Lesson Slides Hands-on Recordings Galaxy servers
    Downloading and Deleting Data in Galaxy

    Frequently Asked Questions

    Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.


    This material is maintained by:

    AvatarJennifer Hillman-Jackson AvatarHelena Rasche

    For any question related to this topic and the content, you can contact them or visit our Gitter channel.


    This material was contributed to by:

    AvatarSimon Bray AvatarWolfgang Maier AvatarMarius van den Beek AvatarSimon Gladman AvatarHelena Rasche AvatarDave Clements AvatarAvani Khadilkar AvatarElizabeth Sheets AvatarCharles Overbeck AvatarEnis Afgan AvatarAnne Pajon AvatarMaria Doyle AvatarSaskia Hiltemann AvatarDaniela Butano AvatarYo Yehudi AvatarAnne Fouilloux AvatarAnton Nekrutenko AvatarBérénice Batut AvatarFotis E. Psomopoulos AvatarToby Hodges AvatarErasmus+ Programme AvatarJohn Chilton AvatarJon Trow AvatarAdelaide Rhodes AvatarMiguel Roncoroni AvatarMartin Čech AvatarDelphine Lariviere