Using Galaxy and Managing your Data

A collection of microtutorials explaining various features of the Galaxy user interface and manipulating data within Galaxy.

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Material

Uploading Data

These tutorials will help you get data into Galaxy, before you analyse it.

Lesson Slides Hands-on Recordings Galaxy servers
Getting data into Galaxy
plain text
Rule Based Uploader tutorial
  • Rule Based Uploader: Advanced tutorial
    SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis plain text tutorial
  • Histories

    Managing your analysis histories efficiently

    Lesson Slides Hands-on Recordings Galaxy servers
    Searching Your History
    tutorial
    Understanding Galaxy history system
    tutorial

    Making Data Manageable

    Now that you have data in Galaxy, let's make it easier to work with through collections and structured data.

    Lesson Slides Hands-on Recordings Galaxy servers
    Group tags for complex experimental designs
    tutorial
    Multisample Analysis tutorial
    Name tags for following complex histories
    tutorial
    Using dataset collections tutorial
  • Workflows

    Using Galaxy workflows to scale analysis

    Lesson Slides Hands-on Recordings Galaxy servers
    Automating Galaxy workflows using the command line tutorial
  • Creating, Editing and Importing Galaxy Workflows tutorial
    Extracting Workflows from Histories tutorial
    Galaxy workflows in Dockstore
    plain text
    Using Workflow Parameters tutorial
  • Workflow Reports tutorial
  • Analysing Data

    Some advanced topics in data analysis.

    Lesson Slides Hands-on Recordings Galaxy servers
    InterMine integration with Galaxy
    tutorial
    JupyterLab in Galaxy tutorial
    RStudio in Galaxy tutorial
    Use Jupyter notebooks in Galaxy
    tutorial

    Download and free up space

    Once you are done with your analyses in Galaxy, it's time to download your data and free up space.

    Lesson Slides Hands-on Recordings Galaxy servers
    Downloading and Deleting Data in Galaxy
    tutorial

    Frequently Asked Questions

    Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

    Maintainers

    This material is maintained by:

    orcid logoAvatarJennifer Hillman-Jacksonorcid logoAvatarHelena Rasche

    For any question related to this topic and the content, you can contact them or visit our Gitter channel.

    Contributors

    This material was contributed to by:

    AvatarSimon BrayAvatarWolfgang MaierAvatarMarius van den Beekorcid logoAvatarSimon Gladmanorcid logoAvatarHelena RascheAvatarDave ClementsAvatarAvani KhadilkarAvatarElizabeth SheetsAvatarCharles OverbeckAvatarEnis AfganAvatarAnne PajonAvatarMaria Doyleorcid logoAvatarSaskia HiltemannAvatarDaniela ButanoAvatarYo YehudiAvatarAnton Nekrutenkoorcid logoAvatarBérénice Batutorcid logoAvatarFotis E. Psomopoulosorcid logoAvatarToby HodgesAvatarErasmus+ Programmeorcid logoAvatarJohn ChiltonAvatarJon TrowAvatarAdelaide RhodesAvatarMiguel Roncoroniorcid logoAvatarBert DroesbekeAvatarMartin ČechAvatarDelphine Lariviere