Deepti Varshney
Affiliations
Contributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
1 Editorial Role
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
- Topic: Plants
19 Tutorials
- Assembly / Large genome assembly and polishing 🧐
- Assembly / Chloroplast genome assembly 🧐
- Assembly / ERGA post-assembly QC 🧐
- Assembly / Decontamination of a genome assembly 🧐
- Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data 🧐
- Genome Annotation / From small to large-scale genome comparison 🧐
- Genome Annotation / Genome annotation with Braker3 🧐
- Genome Annotation / Long non-coding RNAs (lncRNAs) annotation with FEELnc 🧐
- Genome Annotation / Identification of AMR genes in an assembled bacterial genome 🧐
- Sequence analysis / Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants ✍️
- Sequence analysis / NCBI BLAST+ against the MAdLand ✍️ 🧐
- Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition 🧐
- Microbiome / 16S Microbial analysis with Nanopore data 🧐
- Microbiome / Calculating α and β diversity from microbiome taxonomic data 🧐
- Microbiome / Binning of metagenomic sequencing data 🧐
- Microbiome / Building an amplicon sequence variant (ASV) table from 16S data using DADA2 🧐
- Introduction to Galaxy Analyses / From peaks to genes 🧐
- Using Galaxy and Managing your Data / Understanding Galaxy history system 🧐
2 Video Recordings
- Sequence analysis / Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants 💬 🗣
3 Events
Your Contributor Card
orcid Deepti Varshney
Editorial board member for Plants
19 Tutorials 3 Events 2 Videos Editorial Board
GTN contributor since 2022-12
GitHub Activity github Issues Reported
GTN contributor since 2022-12
External Links
Favourite Topics
Favourite Formats