Armin Dadras
Affiliations
UFRFormer Affiliations
EuroScienceGatewayContributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
Tutorials
- Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease π§
- Computational chemistry / High Throughput Molecular Dynamics and Analysis π§
- Using Galaxy and Managing your Data / Creating high resolution images of Galaxy Workflows π§
- Using Galaxy and Managing your Data / Importing (uploading) data from Onedata π§
- Using Galaxy and Managing your Data / Getting started with Onedata distributed storage π§
- Using Galaxy and Managing your Data / Onedata user-owned storage π§
- Using Galaxy and Managing your Data / RStudio in Galaxy π π§
- Using Galaxy and Managing your Data / Understanding Galaxy history system π§
- Using Galaxy and Managing your Data / Exporting to Onedata remote π§
- Using Galaxy and Managing your Data / Automating Galaxy workflows using the command line π§
- Imaging / Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy π§
- FAIR Data, Workflows, and Research / RO-Crate in Python π§
- FAIR Data, Workflows, and Research / RO-Crate - Introduction π§
- FAIR Data, Workflows, and Research / Best practices for workflows in GitHub repositories π§
- Microbiome / Binning of metagenomic sequencing data π§
- Development in Galaxy / JavaScript plugins π§
- Development in Galaxy / Setting up a dev Onedata instance π§
- Development in Galaxy / Galaxy Webhooks π§
- Teaching and Hosting Galaxy training / Running a workshop as an instructor π§
- Introduction to Galaxy Analyses / Galaxy Basics for genomics π π§
- Introduction to Galaxy Analyses / From peaks to genes π π§
- Introduction to Galaxy Analyses / NGS data logistics π π§
- Digital Humanities / Transcribing Audio and Video files with Automated Speech Recognition βοΈ π§
- Digital Humanities / OpenRefine Tutorial for researching cultural data βοΈ π§ βοΈ
- Statistics and machine learning / A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy π§
- Statistics and machine learning / Age prediction using machine learning π§
- Statistics and machine learning / Clustering in Machine Learning π§
- Statistics and machine learning / Regression in Machine Learning π§
- Statistics and machine learning / Basics of machine learning π§
- Statistics and machine learning / Introduction to deep learning π§
- Statistics and machine learning / Classification in Machine Learning π§
- Statistics and machine learning / Machine learning: classification and regression π§
- Statistics and machine learning / Fine tune large protein model (ProtTrans) using HuggingFace π§
- Galaxy Server administration / Setting up Celery Workers for Galaxy π§
- Galaxy Server administration / Galaxy Installation with Ansible π§
- Galaxy Server administration / Customizing the look of Galaxy π§
- Galaxy Server administration / Connecting Galaxy to a compute cluster π§
- Galaxy Server administration / Running Jobs on Remote Resources with Pulsar π§
- Galaxy Server administration / Galaxy Monitoring with Reports π§
- Galaxy Server administration / Galaxy Database schema π§
- Galaxy Server administration / Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD) π§
- Galaxy Server administration / Galaxy Interactive Tools π§
- Galaxy Server administration / Customizing the look of Galaxy (Manual) π§
- Galaxy Server administration / Use Apptainer containers for running Galaxy jobs π§
- Proteomics / Peptide and Protein ID using SearchGUI and PeptideShaker π§
- Proteomics / Peptide and Protein Quantification via Stable Isotope Labelling (SIL) π§
- Proteomics / Label-free versus Labelled - How to Choose Your Quantitation Method π§
- Proteomics / Peptide and Protein ID using OpenMS tools π§
- Proteomics / Mass spectrometry imaging: Loading and exploring MSI data π§
- Proteomics / Secretome Prediction π§
- Proteomics / Protein FASTA Database Handling π§
- Proteomics / Detection and quantitation of N-termini (degradomics) via N-TAILS π§
- Transcriptomics / Visualization of RNA-Seq results with Volcano Plot π
- Transcriptomics / Reference-based RNA-Seq data analysis π§
- Single Cell / GO Enrichment Analysis on Single-Cell RNA-Seq Data π§
- Single Cell / Single-cell ATAC-seq standard processing with SnapATAC2 π§
- Single Cell / Pre-processing of Single-Cell RNA Data π§
- Epigenetics / Identification of the binding sites of the Estrogen receptor π§
- Epigenetics / Formation of the Super-Structures on the Inactive X π§
- Epigenetics / Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1) π§
- Contributing to the Galaxy Training Material / Creating content in Markdown π§
- Contributing to the Galaxy Training Material / Preview the GTN website as you edit your training material π§
- Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials π§
- Contributing to the Galaxy Training Material / Creating Interactive Galaxy Tours π§
- Introduction to Galaxy Analyses / Von Peaks zu Genen π
- Introduction to Galaxy Analyses / De picos a genes π
- Introduction to Galaxy Analyses / Dai picchi ai geni π
Slides
- Development in Galaxy / Tool development and integration into Galaxy π§
- Statistics and machine learning / Regression in Machine Learning π§
- Statistics and machine learning / Introduction to Machine learning π§
- Statistics and machine learning / Classification in Machine Learning π§
- Statistics and machine learning / Fine-tuning Protein Language Model π§
- Galaxy Server administration / Gearing towards production π§
- Transcriptomics / Introduction to Transcriptomics π§
FAQs
- How do I cite the tools I used in my history?
- How do I manage my Galaxy storage?
- How do I manage my repositories on Galaxy?
- How do I re-use equivalent jobs in Galaxy (aka Job Cache)?
Events
- Galaxy Training Academy 2025 πͺ π§βπ«
GitHub Activity
github Issues Reported
20 Merged Pull Requests
See all of the github Pull Requests and github Commits by Armin Dadras.
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Updated the workflow of OpenRefine according to the best practices and updated the workflow file.
GTAdigital-humanities -
Add bio for European Union in ORGANISATIONS.yaml
template-and-tools
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Fix: Explicitly use conda-provided gem binary during install to avoid macOS system Ruby conflicts
template-and-toolscontributing
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Galaxy hub grants update for grants.yaml file
template-and-tools
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Added new organisations from galaxy-hub.
template-and-tools
Reviewed 18 PRs
We love our community reviewing each other's work!
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New Tutorial [WIP] Whisper for speech recognition
digital-humanities -
[News Item] Add BioNT project announcement for translated tutorials
news
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fix param
microbiome -
Fix join date for Daniela Schneider
template-and-tools
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Added new organisations from galaxy-hub.
template-and-tools
News
Survey about a week-long Galaxy Admin Training in Europe
GTN is now integrated with WorkflowHub
External Links
Favourite Topics
Favourite Formats