Anton Nekrutenko
Contributions
The following list includes only slides and tutorials where the individual has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
GitHub Activity
Editorial Roles
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
Tutorials
- Introduction to Galaxy Analyses / Very Short Introductions: QC
- Introduction to Galaxy Analyses / NGS data logistics
- Introduction to Galaxy Analyses / IGV Introduction
- Introduction to Galaxy Analyses / Galaxy Basics for genomics
- Transcriptomics / Reference-based RNAseq data analysis (long)
- Variant Analysis / Calling very rare variants
- Variant Analysis / Calling variants in diploid systems
- Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis ✍️
- Variant Analysis / Calling variants in non-diploid systems
- Genome Annotation / Comparative gene analysis in unannotated genomes
- Foundations of Data Science / Versioning your code and data with git ✍️
- Foundations of Data Science / Introduction to sequencing with Python (part three) ✍️
- Foundations of Data Science / Data manipulation with Pandas ✍️
- Foundations of Data Science / Introduction to sequencing with Python (part four) ✍️
- Foundations of Data Science / A (very) brief history of genomics ✍️
- Foundations of Data Science / Introduction to sequencing with Python (part one) ✍️
- Foundations of Data Science / Introduction to sequencing with Python (part two) ✍️
- Using Galaxy and Managing your Data / Multisample Analysis
- Using Galaxy and Managing your Data / Searching Your History
- Using Galaxy and Managing your Data / Using dataset collections
- Using Galaxy and Managing your Data / Understanding Galaxy history system ✍️
- Assembly / Unicycler Assembly
- Assembly / Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
- Assembly / Making sense of a newly assembled genome
- Assembly / Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
Slides
- Foundations of Data Science / A brief history of modern biology ✍️
- Assembly / Unicycler Assembly
- Assembly / Deeper look into Genome Assembly algorithms
Video Recordings
- Introduction to Galaxy Analyses / NGS data logistics 💬 🗣
- Introduction to Galaxy Analyses / Galaxy Basics for genomics 🗣
- Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis 💬 🗣
- Using Galaxy and Managing your Data / Using dataset collections 🗣
