Galaxy Server Administration — Editorial Board Home

This is a new, experimental "Editorial Board Home" for a given topic. It is intended to provide a single place for maintainers and editorial board members to find out key information about their topic and identify action items.

Editorial Board

orcid logoHelena Rasche avatar Helena Rascheorcid logoMartin Čech avatar Martin Čechorcid logoBjörn Grüning avatar Björn Grüningorcid logoNate Coraor avatar Nate Coraororcid logoMira Kuntz avatar Mira Kuntz

Action Items

Item Status Why you should do this
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Review Feedback Received Ongoing 🔁 Review all feedback received for the Galaxy Server Administration topic and create GitHub issues or PRs where needed.
Review open Pull Requests Ongoing 🔁 View all open PRs in the Galaxy Server Administration topic and review, comment and merge!
Review open GitHub Issues Ongoing 🔁 View all open issues related to the Galaxy Server Administration topic and comment, fix, or ask others for help!

Topic Materials

Material Contributions v2 Pre-requisites Follow up trainings Data on Zenodo Notebook Server Compatibility
Galaxy from an administrator's point of view ❌ ❌
Ansible ✅ ❌
Galaxy Installation with Ansible ✅ ✅ ✅
Connecting Galaxy to a compute cluster ✅ ✅ ✅ ✅
Mapping Jobs to Destinations using TPV ✅ ✅ ✅
Running Jobs on Remote Resources with Pulsar ✅ ✅ ✅
Use Apptainer containers for running Galaxy jobs ✅ ✅ ❌
Alternative Celery Deployment for Galaxy ✅ ✅ ❌
Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD) ✅ ✅ ✅
Data Libraries ❌ ✅ ✅
Distributed Object Storage ❌ ✅ ✅
Reference Data with CVMFS ✅ ✅ ❌
Reference Data with CVMFS without Ansible ✅ ❌
Reference Data with Data Managers ✅ ✅ ❌
Setting up Celery Workers for Galaxy ✅ ✅ ❌
Automation with Jenkins ❌ ✅ ✅
Deploying a Beacon v1 in Galaxy ✅ ✅ ❌
Enable upload via FTP ❌ ✅ ❌
External Authentication ❌ ✅ ✅
Galaxy Interactive Tools ✅ ✅ ❌
Galaxy Tool Management with Ephemeris ❌ ✅
How I learned to stop worrying and love the systemd ✅ ✅ ✅
Performant Uploads with TUS ❌ ✅ ❌
Training Infrastructure as a Service (TIaaS) ❌ ✅ ❌
Galaxy on the Cloud ✅ ✅
Galaxy Installation on Kubernetes ❌ ✅ ✅
Managing Galaxy on Kubernetes ❌ ✅ ✅
Galaxy usage on SURF Research Cloud ✅ ✅ ✅ ❌
Pulsar usage on SURF Research Cloud ✅ ✅ ✅ ❌
Deploying Tailscale/Headscale for private mesh networking ✅ ✅ ❌
Deploying Wireguard for private mesh networking ✅ ✅ ❌
Deploying a compute cluster in OpenStack via Terraform ❌ ❌
Customizing the look of Galaxy ✅ ✅ ✅
Customizing the look of Galaxy (Manual) ✅ ✅ ✅
Galaxy Administrator Time Burden and Technology Usage ✅ ✅
Galaxy Troubleshooting ❌ ✅
Gearing towards production ✅ ✅
Server Maintenance: Cleanup, Backup, and Restoration ✅ ✅ ✅
Upgrading Galaxy ✅ ✅ ❌
User, Role, Group, Quota, and Authentication managment ✅ ❌
Galaxy Monitoring ❌ ✅
Galaxy Monitoring with Telegraf and Grafana ❌ ✅ ✅
Galaxy Monitoring with gxadmin ❌ ❌
Monitoring Galaxy and Pulsar with Sentry ✅ ✅ ❌
Advanced customisation of a Galaxy instance ❌ ✅
Controlling Galaxy with systemd or Supervisor ❌ ✅
Galaxy Monitoring with Reports ✅ ✅ ❌
uWSGI ❌ ✅
Adding file-sources to Galaxy ❌ ✅
Create a subdomain for your community on UseGalaxy.eu ✅ ✅
Docker and Galaxy ❌ ❌
Empathy ❌ ✅
Galactic Database ❌ ✅
Galaxy Database schema ✅ ❌
Server: Other ❌ ❌

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Learning Pathways using materials from this Topic

GTN Logo on a spiral galaxy background with text galaxy admin training
Admin Training Course

Learn how to setup, configure, and maintain your own Galaxy server. This learning pathway will guide you through all the steps required to setup your own Galaxy server with Ansible, configuring it, and making it production ready.

Galaxy administrators 5-day course admin
Image of a researcher or developer on a computer thinking of building a community.
Tool development for a nice & shiny subdomain

Discover Galaxy’s communities and learn how to create your subdomain and enrich it by writing, testing and submiting your tools on Galaxy. This learning pathway will guide you through all the steps required to build a tool for Galaxy with Planemo for batch tools and how write an interactive tool.

subdomain community tool development 3-day course dev
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TODO once this is merged: https://github.com/galaxyproject/training-material/pull/4963

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