Teresa Müller
Affiliations
Contributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
Editorial Roles
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
Tutorials
- Transcriptomics / Visualization of RNA-Seq results with Volcano Plot 🧐
- Statistics and machine learning / Deep Learning (Part 3) - Convolutional neural networks (CNN) 🧐
- Statistics and machine learning / Classification in Machine Learning 🧐
- Statistics and machine learning / Fine tune large protein model (ProtTrans) using HuggingFace 🧐
- Contributing to the Galaxy Training Material / Preview the GTN website as you edit your training material 📝
- Sequence analysis / Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants 🧐
- Sequence analysis / Quality and contamination control in bacterial isolate using Illumina MiSeq Data 🧐
- Sequence analysis / Quality Control 🧐
- Sequence analysis / Mapping 🧐
- Variant Analysis / Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data 🧐
- Using Galaxy and Managing your Data / Understanding Galaxy history system 🧐
- Using Galaxy and Managing your Data / Use Jupyter notebooks in Galaxy 📝 🧐
- Using Galaxy and Managing your Data / JupyterLab in Galaxy 📝 🧐
- Microbiome / Binning of metagenomic sequencing data 🧐
- Microbiome / Identification of the micro-organisms in a beer using Nanopore sequencing ✍️ 🧐
- Microbiome / Taxonomic Profiling and Visualization of Metagenomic Data 🧐
- Microbiome / Calculating α and β diversity from microbiome taxonomic data 🧐
- Introduction to Galaxy Analyses / Galaxy Basics for genomics 🧐
- Introduction to Galaxy Analyses / From peaks to genes 📝
- Introduction to Galaxy Analyses / A short introduction to Galaxy 🧐
- Foundations of Data Science / Learning about one gene across biological resources and formats ✍️ 🧐
- Foundations of Data Science / One protein along the UniProt page 🧐
- Single Cell / Clustering 3K PBMCs with Seurat 🧐
- Single Cell / Filter, plot and explore single-cell RNA-seq data with Scanpy (Python) 🧐
- Single Cell / Clustering 3K PBMCs with Scanpy 🧐
- Single Cell / Generating a single cell matrix using Alevin 🧐
- Genome Annotation / Long non-coding RNAs (lncRNAs) annotation with FEELnc 🧐
- Genome Annotation / Bacterial Genome Annotation 🧐
- Assembly / Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data 🧐
- Assembly / Assembly of the mitochondrial genome from PacBio HiFi reads 🧐
- Assembly / Chloroplast genome assembly 🧐
- Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data 🧐
- Assembly / ERGA post-assembly QC 🧐
Slides
- Statistics and machine learning / Introduction to Machine learning 🧐
- Statistics and machine learning / Classification in Machine Learning 🧐
- Statistics and machine learning / Fine-tuning Protein Language Model 🧐
- Statistics and machine learning / Regression in Machine Learning 🧐
- Single Cell / Single-cell Formats and Resources 🧐
FAQs
Events
- Workshop on high-throughput sequencing data analysis with Galaxy 🧑🏫
- Workshop on high-throughput sequencing data analysis with Galaxy 🎪 🧑🏫
- Galaxy Training Academy 2025 🎪 🧑🏫
- From Data to Discovery: Metagenomics, RNA-Seq - NGS Bioinformatics with Galaxy 🎪 🧑🏫
- Galaxy Training Academy 2024 🎪 🧑🏫
GitHub Activity
github Issues Reported
43 Merged Pull Requests
See all of the github Pull Requests and github Commits by Teresa Müller.
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added Slack channels to the event page
template-and-toolsGTA -
Gießen hub news
template-and-toolsnewsGTA -
Update jupyter lab
galaxy-interfacefaqsGTA -
Update gta event page
template-and-tools -
Added admin survey as a news post
news
Reviewed 58 PRs
We love our community reviewing each other's work!
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[GTA] add usegalaxy.fr tiaas link
template-and-toolsGTA -
[Google Form] New Recording Submission! - Seurat - MarisaJL
single-cellGTA -
Gießen hub news
template-and-toolsnewsGTA -
added Slack channels to the event page
template-and-toolsGTA -
[Google Form] New Recording Submission! - TAPscan - Deeptivarshney
sequence-analysisGTA
News

Registration Open for BioNT Community Event & CarpentryConnect Heidelberg
11 July 2024
Are you interested in training and want to connect with other enthusiastic trainers? Then join the BioNT Community Event & CarpentryConnect - Heidelberg 2024. The Carpentries and other learning communities will meet to network and collaborate during this 3-day event. The GTN will be present with a Poster, Lightning Talks and a Mini-hackathon.
External Links
Favourite Topics
Favourite Formats