Tristan Reynolds

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Assembly
• Topic: Variant Analysis

Tutorials

• Assembly / Hybrid genome assembly - Nanopore and Illumina ✍️ 🧐
• Genome Annotation / Identification of AMR genes in an assembled bacterial genome 📝
• Ecology / Checking expected species and contamination in bacterial isolate 📝
• Microbiome / Taxonomic Profiling and Visualization of Metagenomic Data 📝
• Microbiome / 16S Microbial Analysis with mothur (short) 📝
• Microbiome / 16S Microbial Analysis with mothur (extended) 📝
• Epigenetics / ATAC-Seq data analysis 📝
• Epigenetics / Hi-C analysis of Drosophila melanogaster cells using HiCExplorer 📝
• Epigenetics / Formation of the Super-Structures on the Inactive X 📝
• Introduction to Galaxy Analyses / Best Practices for Citing Galaxy ✍️ 🧐
• FAIR Data, Workflows, and Research / Uploading Data to Zenodo from Galaxy ✍️ 🧐
• FAIR Data, Workflows, and Research / Integrating InvenioRDM-compatible Repositories with Galaxy ✍️ 🧐
• Sequence analysis / Mapping 📝
• Sequence analysis / Quality and contamination control in bacterial isolate using Illumina MiSeq Data 📝

FAQs

• Creating a paired collection

Video Recordings

• Introduction to Galaxy Analyses / A short introduction to Galaxy 💬 🗣
• Sequence analysis / Mapping 💬 🗣

GitHub Activity

github Issues Reported

13 Merged Pull Requests

See all of the github Pull Requests and github Commits by Tristan Reynolds.

• Update kraken2 to use PE collection in MiSeq quality and contamination control tutorial
  template-and-tools
  sequence-analysis
• Updates to the 16s microbial analysis with mothur short and extended tutorials
  template-and-tools
  faqs
  microbiome
• Update kraken2 to use PE collection in Taxonomic Profiling tutorial
  microbiome
• Update kraken2 to use PE collection in Bacterial Isolate Species and Contamination tutorial
  ecology
• Update bowtie2 to use PE collection in ATAC-Seq data analysis tutorial
  epigenetics

Reviewed 2 PRs

We love our community reviewing each other's work!

• New Tutorials on How to Cite Galaxy and Integrate InvenioRDM Repositories with Galaxy
  introduction
  fair
• Submitting a New Hybrid Genome Assembly Tutorial
  template-and-tools
  assembly

External Links

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