Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

orcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoClea Siguret avatar Clea SiguretFrederick Tan avatar Frederick Tanorcid logoBjörn Grüning avatar Björn Grüningorcid logoColine Royaux avatar Coline RoyauxElischa Berger avatar Elischa Bergerorcid logoErwan Corre avatar Erwan CorreCandace Savonen avatar Candace Savonenorcid logoMaria Doyle avatar Maria Doyleorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoCameron Hyde avatar Cameron HydeJoachim Wolff avatar Joachim Wolfforcid logoNicola Soranzo avatar Nicola SoranzoNatalie Kucher avatar Natalie Kucherorcid logoTeresa Müller avatar Teresa Müllerorcid logoAnika Erxleben avatar Anika ErxlebenAva Hoffman avatar Ava Hoffmanorcid logoBérénice Batut avatar Bérénice Batutorcid logoStéphanie Robin avatar Stéphanie RobinWilliam Durand avatar William Durandorcid logoHelena Rasche avatar Helena RascheSimon Bray avatar Simon Brayorcid logoLaura Leroi avatar Laura LeroiMatthias Bernt avatar Matthias BerntAnup Kumar avatar Anup Kumarorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoAlexandre Cormier avatar Alexandre CormierVerena Moosmann avatar Verena Moosmannorcid logoSaskia Hiltemann avatar Saskia HiltemannElizabeth Humphries avatar Elizabeth Humphriesorcid logoWolfgang Maier avatar Wolfgang MaierRobert Meller avatar Robert Mellerorcid logoDeepti Varshney avatar Deepti VarshneySwathi Nataraj avatar Swathi NatarajKatherine Cox avatar Katherine Coxorcid logoMateo Boudet avatar Mateo BoudetEric Tvedte avatar Eric Tvedte

Funding

These individuals or organisations provided funding support for the development of this resource

References