Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

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Contributors

This material was contributed to by:

orcid logoAnika Erxleben avatar Anika ErxlebenVerena Moosmann avatar Verena Moosmannorcid logoTeresa Müller avatar Teresa Müllerorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoBjörn Grüning avatar Björn GrüningSwathi Nataraj avatar Swathi Natarajorcid logoHelena Rasche avatar Helena RascheSimon Bray avatar Simon Brayorcid logoCristóbal Gallardo avatar Cristóbal GallardoCandace Savonen avatar Candace Savonenorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoDeepti Varshney avatar Deepti VarshneyEric Tvedte avatar Eric Tvedteorcid logoLaura Leroi avatar Laura LeroiMatthias Bernt avatar Matthias BerntElischa Berger avatar Elischa Bergerorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoColine Royaux avatar Coline RoyauxKatherine Cox avatar Katherine CoxElizabeth Humphries avatar Elizabeth HumphriesRobert Meller avatar Robert MellerWilliam Durand avatar William DurandAva Hoffman avatar Ava Hoffmanorcid logoMaria Doyle avatar Maria DoyleJoachim Wolff avatar Joachim Wolfforcid logoMateo Boudet avatar Mateo BoudetFrederick Tan avatar Frederick Tanorcid logoBérénice Batut avatar Bérénice Batutorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoCameron Hyde avatar Cameron Hydeorcid logoClea Siguret avatar Clea SiguretNatalie Kucher avatar Natalie Kucherorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoErwan Corre avatar Erwan CorreAnup Kumar avatar Anup Kumar

Funding

These individuals or organisations provided funding support for the development of this resource

References