Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
NCBI BLAST+ against the MAdLand
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

orcid logoColine Royaux avatar Coline RoyauxWilliam Durand avatar William Durandorcid logoErwan Corre avatar Erwan Correorcid logoAlexandre Cormier avatar Alexandre CormierSwathi Nataraj avatar Swathi NatarajFrederick Tan avatar Frederick TanRobert Meller avatar Robert Mellerorcid logoNicola Soranzo avatar Nicola SoranzoTeresa Müller avatar Teresa MüllerCandace Savonen avatar Candace Savonenorcid logoBjörn Grüning avatar Björn Grüningorcid logoCameron Hyde avatar Cameron Hydeorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoClea Siguret avatar Clea SiguretNatalie Kucher avatar Natalie Kucherorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMaria Doyle avatar Maria DoyleKatherine Cox avatar Katherine Coxorcid logoMateo Boudet avatar Mateo Boudetorcid logoLaura Leroi avatar Laura Leroiorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoStéphanie Robin avatar Stéphanie RobinMatthias Bernt avatar Matthias BerntElizabeth Humphries avatar Elizabeth HumphriesAnup Kumar avatar Anup Kumarorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoHelena Rasche avatar Helena RascheJoachim Wolff avatar Joachim WolffAva Hoffman avatar Ava HoffmanDeepti Varshney avatar Deepti Varshneyorcid logoBérénice Batut avatar Bérénice BatutEric Tvedte avatar Eric TvedteSimon Bray avatar Simon Bray

Funding

These individuals or organisations provided funding support for the development of this resource

References