Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Robert Meller avatar Robert Mellerorcid logoLaura Leroi avatar Laura Leroiorcid logoSaskia Hiltemann avatar Saskia HiltemannNatalie Kucher avatar Natalie Kucherorcid logoCristóbal Gallardo avatar Cristóbal GallardoWilliam Durand avatar William DurandFrederick Tan avatar Frederick Tanorcid logoClea Siguret avatar Clea SiguretJoachim Wolff avatar Joachim Wolfforcid logoMateo Boudet avatar Mateo Boudetorcid logoBérénice Batut avatar Bérénice Batutorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoDeepti Varshney avatar Deepti VarshneyMatthias Bernt avatar Matthias Berntorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoTeresa Müller avatar Teresa MüllerAva Hoffman avatar Ava Hoffmanorcid logoColine Royaux avatar Coline RoyauxCandace Savonen avatar Candace SavonenSwathi Nataraj avatar Swathi NatarajElischa Berger avatar Elischa Bergerorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoErwan Corre avatar Erwan CorreVerena Moosmann avatar Verena MoosmannAnup Kumar avatar Anup KumarElizabeth Humphries avatar Elizabeth HumphriesKatherine Cox avatar Katherine Coxorcid logoAlexandre Cormier avatar Alexandre CormierSimon Bray avatar Simon Brayorcid logoHelena Rasche avatar Helena Rascheorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoBjörn Grüning avatar Björn GrüningEric Tvedte avatar Eric Tvedteorcid logoMaria Doyle avatar Maria Doyleorcid logoCameron Hyde avatar Cameron Hydeorcid logoAnika Erxleben avatar Anika Erxleben

Funding

These individuals or organisations provided funding support for the development of this resource

References