Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

orcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoCameron Hyde avatar Cameron Hydeorcid logoErwan Corre avatar Erwan CorreSwathi Nataraj avatar Swathi Natarajorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoClea Siguret avatar Clea Siguretorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoTeresa Müller avatar Teresa MüllerVerena Moosmann avatar Verena MoosmannMatthias Bernt avatar Matthias BerntCandace Savonen avatar Candace Savonenorcid logoHelena Rasche avatar Helena RascheFrederick Tan avatar Frederick TanKatherine Cox avatar Katherine Coxorcid logoMateo Boudet avatar Mateo Boudetorcid logoBjörn Grüning avatar Björn Grüningorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoWolfgang Maier avatar Wolfgang MaierNatalie Kucher avatar Natalie KucherRobert Meller avatar Robert MellerAva Hoffman avatar Ava Hoffmanorcid logoMaria Doyle avatar Maria DoyleSimon Bray avatar Simon Brayorcid logoColine Royaux avatar Coline Royauxorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAnthony Bretaudeau avatar Anthony BretaudeauWilliam Durand avatar William Durandorcid logoStéphanie Robin avatar Stéphanie RobinElizabeth Humphries avatar Elizabeth Humphriesorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoLaura Leroi avatar Laura LeroiJoachim Wolff avatar Joachim Wolfforcid logoAnne Fouilloux avatar Anne FouillouxEric Tvedte avatar Eric TvedteElischa Berger avatar Elischa BergerAnup Kumar avatar Anup Kumarorcid logoBérénice Batut avatar Bérénice Batut

Funding

These individuals or organisations provided funding support for the development of this resource

References