Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

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Contributors

This material was contributed to by:

orcid logoAnthony Bretaudeau avatar Anthony BretaudeauCandace Savonen avatar Candace Savonenorcid logoBjörn Grüning avatar Björn GrüningWilliam Durand avatar William Durandorcid logoHelena Rasche avatar Helena RascheSimon Bray avatar Simon Brayorcid logoColine Royaux avatar Coline Royauxorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoErwan Corre avatar Erwan CorreSwathi Nataraj avatar Swathi Natarajorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoMateo Boudet avatar Mateo Boudetorcid logoTeresa Müller avatar Teresa Müllerorcid logoMaria Doyle avatar Maria Doyleorcid logoLaura Leroi avatar Laura LeroiAva Hoffman avatar Ava HoffmanVerena Moosmann avatar Verena MoosmannNatalie Kucher avatar Natalie KucherEric Tvedte avatar Eric TvedteFrederick Tan avatar Frederick Tanorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoDeepti Varshney avatar Deepti VarshneyMatthias Bernt avatar Matthias Berntorcid logoAnne Fouilloux avatar Anne FouillouxElizabeth Humphries avatar Elizabeth HumphriesJoachim Wolff avatar Joachim WolffKatherine Cox avatar Katherine Coxorcid logoBérénice Batut avatar Bérénice Batutorcid logoClea Siguret avatar Clea Siguretorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoAnika Erxleben avatar Anika ErxlebenRobert Meller avatar Robert MellerAnup Kumar avatar Anup Kumarorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoCameron Hyde avatar Cameron Hydeorcid logoCristóbal Gallardo avatar Cristóbal GallardoElischa Berger avatar Elischa Berger

Funding

These individuals or organisations provided funding support for the development of this resource

References