Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

orcid logoBérénice Batut avatar Bérénice BatutKatherine Cox avatar Katherine CoxSwathi Nataraj avatar Swathi Natarajorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoAlexandre Cormier avatar Alexandre CormierJoachim Wolff avatar Joachim Wolfforcid logoMateo Boudet avatar Mateo Boudetorcid logoTeresa Müller avatar Teresa MüllerElizabeth Humphries avatar Elizabeth Humphriesorcid logoStéphanie Robin avatar Stéphanie RobinAnup Kumar avatar Anup KumarRobert Meller avatar Robert Mellerorcid logoAnika Erxleben avatar Anika ErxlebenWilliam Durand avatar William DurandCandace Savonen avatar Candace Savonenorcid logoClea Siguret avatar Clea Siguretorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoDeepti Varshney avatar Deepti VarshneyMatthias Bernt avatar Matthias Berntorcid logoBjörn Grüning avatar Björn GrüningVerena Moosmann avatar Verena MoosmannElischa Berger avatar Elischa BergerFrederick Tan avatar Frederick Tanorcid logoErwan Corre avatar Erwan Correorcid logoMaria Doyle avatar Maria DoyleNatalie Kucher avatar Natalie Kucherorcid logoAnne Fouilloux avatar Anne FouillouxAva Hoffman avatar Ava Hoffmanorcid logoLaura Leroi avatar Laura Leroiorcid logoColine Royaux avatar Coline RoyauxEric Tvedte avatar Eric Tvedteorcid logoCameron Hyde avatar Cameron Hydeorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoNicola Soranzo avatar Nicola SoranzoSimon Bray avatar Simon Brayorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoHelena Rasche avatar Helena Rasche

Funding

These individuals or organisations provided funding support for the development of this resource

References