Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

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Contributors

This material was contributed to by:

orcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoClea Siguret avatar Clea Siguretorcid logoBjörn Grüning avatar Björn Grüningorcid logoBérénice Batut avatar Bérénice BatutEric Tvedte avatar Eric TvedteMatthias Bernt avatar Matthias BerntSwathi Nataraj avatar Swathi NatarajAnup Kumar avatar Anup Kumarorcid logoErwan Corre avatar Erwan CorreCandace Savonen avatar Candace SavonenElizabeth Humphries avatar Elizabeth Humphriesorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoColine Royaux avatar Coline Royauxorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoCristóbal Gallardo avatar Cristóbal GallardoAva Hoffman avatar Ava Hoffmanorcid logoMateo Boudet avatar Mateo Boudetorcid logoHelena Rasche avatar Helena RascheVerena Moosmann avatar Verena MoosmannRobert Meller avatar Robert Mellerorcid logoAnthony Bretaudeau avatar Anthony BretaudeauElischa Berger avatar Elischa BergerWilliam Durand avatar William Durandorcid logoDeepti Varshney avatar Deepti VarshneyFrederick Tan avatar Frederick Tanorcid logoTeresa Müller avatar Teresa Müllerorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoLaura Leroi avatar Laura LeroiSimon Bray avatar Simon Brayorcid logoAnika Erxleben avatar Anika ErxlebenNatalie Kucher avatar Natalie Kucherorcid logoMaria Doyle avatar Maria Doyleorcid logoCameron Hyde avatar Cameron Hydeorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoNicola Soranzo avatar Nicola SoranzoJoachim Wolff avatar Joachim WolffKatherine Cox avatar Katherine Cox

Funding

These individuals or organisations provided funding support for the development of this resource

References