Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

Anup Kumar avatar Anup KumarMatthias Bernt avatar Matthias Berntorcid logoNicola Soranzo avatar Nicola SoranzoAva Hoffman avatar Ava Hoffmanorcid logoClea Siguret avatar Clea SiguretJoachim Wolff avatar Joachim WolffVerena Moosmann avatar Verena MoosmannElischa Berger avatar Elischa BergerRobert Meller avatar Robert MellerFrederick Tan avatar Frederick Tanorcid logoMaria Doyle avatar Maria DoyleKatherine Cox avatar Katherine CoxElizabeth Humphries avatar Elizabeth Humphriesorcid logoWolfgang Maier avatar Wolfgang MaierSimon Bray avatar Simon BrayNatalie Kucher avatar Natalie Kucherorcid logoTeresa Müller avatar Teresa Müllerorcid logoCristóbal Gallardo avatar Cristóbal GallardoCandace Savonen avatar Candace SavonenWilliam Durand avatar William Durandorcid logoBjörn Grüning avatar Björn Grüningorcid logoCameron Hyde avatar Cameron Hydeorcid logoLaura Leroi avatar Laura Leroiorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoMateo Boudet avatar Mateo Boudetorcid logoColine Royaux avatar Coline Royauxorcid logoHelena Rasche avatar Helena Rascheorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoSaskia Hiltemann avatar Saskia HiltemannSwathi Nataraj avatar Swathi Natarajorcid logoBérénice Batut avatar Bérénice Batutorcid logoAnthony Bretaudeau avatar Anthony BretaudeauEric Tvedte avatar Eric Tvedteorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoErwan Corre avatar Erwan Corre

Funding

These individuals or organisations provided funding support for the development of this resource

References