Introduction to Galaxy Analyses

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Material

Your First Analysis

These are the core, foundational topics for learning how to use Galaxy.

Lesson Slides Hands-on Recordings Input dataset Workflows
A short introduction to Galaxy
From peaks to genes
Galaxy 101
Galaxy 101 for everyone
Introduction to Galaxy
Introduction to Genomics and Galaxy

Go a bit further

Explore the Galaxy a bit further after you've finished the basics.

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
How to reproduce published Galaxy analyses
NGS data logistics
Options for using Galaxy

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

You can also use the following Docker image for these tutorials:

docker run -p 8080:80 quay.io/galaxy/introduction-training

NOTE: Use the -d flag at the end of the command if you want to automatically download all the data-libraries into the container.

It will launch a flavored Galaxy instance available on http://localhost:8080. This instance will contain all the tools and workflows to follow the tutorials in this topic. Login as admin with password password to access everything.

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoJennifer Hillman-Jackson avatar Jennifer Hillman-Jacksonorcid logoDave Clements avatar Dave Clements

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

orcid logoAnne Fouilloux avatar Anne FouillouxJoachim Wolff avatar Joachim WolffAlaa Elghamry avatar Alaa ElghamryOlha Nahorna avatar Olha Nahornaorcid logoBjörn Grüning avatar Björn GrüningAnton Nekrutenko avatar Anton NekrutenkoDilmurat Yusuf avatar Dilmurat YusufSarah Peter avatar Sarah Peterorcid logoMelanie Föll avatar Melanie FöllMichele Maroni avatar Michele Maroniorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoClemens Blank avatar Clemens Blankorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoNadia Goué avatar Nadia GouéMarius van den Beek avatar Marius van den Beekorcid logoHelena Rasche avatar Helena Rascheorcid logoAnna Syme avatar Anna SymeAndrea Bagnacani avatar Andrea Bagnacaniorcid logoBérénice Batut avatar Bérénice BatutChristopher Barnett avatar Christopher Barnettorcid logoDave Clements avatar Dave ClementsAnne Pajon avatar Anne Pajonorcid logoDaniel Blankenberg avatar Daniel Blankenberg

Funders

This material was funded by:

Gallantries: Bridging Training Communities in Life Science, Environment and Health avatar Gallantries