Workflows

These workflows are associated with How to reproduce published Galaxy analyses

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

GTN Training: Galaxy 101 For Everyone

Last updated Aug 25, 2021

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Download Galaxy Workflow.ga Galaxy Australia Galaxy Europe Galaxy France Galaxy Main Import to another server (≥23.0+ only!) 
flowchart TD
  0["ℹ️ Input Dataset\niris"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["Convert CSV to tabular"];
  0 -->|output| 1;
  2["Datamash"];
  1 -->|tabular| 2;
  708eea50-ccb4-4660-abce-9203f4a809c4["Output\ndatamash_output"];
  2 --> 708eea50-ccb4-4660-abce-9203f4a809c4;
  style 708eea50-ccb4-4660-abce-9203f4a809c4 stroke:#2c3143,stroke-width:4px;
  3["Remove beginning"];
  1 -->|tabular| 3;
  4["Cut"];
  3 -->|out_file1| 4;
  5["Group"];
  3 -->|out_file1| 5;
  cc5ec52d-e612-46cd-8aca-18b0f7e64684["Output\ngroup1"];
  5 --> cc5ec52d-e612-46cd-8aca-18b0f7e64684;
  style cc5ec52d-e612-46cd-8aca-18b0f7e64684 stroke:#2c3143,stroke-width:4px;
  6["Group"];
  3 -->|out_file1| 6;
  51789c03-4969-4117-9322-41cecdaf2252["Output\ngroup2"];
  6 --> 51789c03-4969-4117-9322-41cecdaf2252;
  style 51789c03-4969-4117-9322-41cecdaf2252 stroke:#2c3143,stroke-width:4px;
  7["Scatterplot w ggplot2"];
  3 -->|out_file1| 7;
  8["Scatterplot w ggplot2"];
  3 -->|out_file1| 8;
  9["Unique"];
  4 -->|out_file1| 9;
  ec39c0ad-eb26-47d6-b9a7-c2e5ffa043c6["Output\nunique_output"];
  9 --> ec39c0ad-eb26-47d6-b9a7-c2e5ffa043c6;
  style ec39c0ad-eb26-47d6-b9a7-c2e5ffa043c6 stroke:#2c3143,stroke-width:4px;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL