Variant Analysis

Exome sequencing means that all protein-coding genes in a genome are sequenced

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

Lesson Slides Hands-on Input dataset Workflows Galaxy tour Galaxy instances
Introduction to Variant analysis
slides
Calling variants in diploid systems
tutorial zenodo_link workflow
Calling variants in non-diploid systems
prokaryote
tutorial zenodo_link interactive_tour
Exome sequencing data analysis
tutorial zenodo_link workflow
Identification of somatic and germline variants from tumor and normal sample pairs
tutorial zenodo_link
Mapping and molecular identification of phenotype-causing mutations
tutorial zenodo_link workflow interactive_tour
Microbial Variant Calling
prokaryote
tutorial zenodo_link workflow interactive_tour

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

Maintainers

This material is maintained by:

Bérénice BatutBérénice Batut, Torsten HouwaartTorsten Houwaart, Björn GrüningBjörn Grüning, Anton NekrutenkoAnton Nekrutenko

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

Bérénice BatutBérénice Batut, Yvan Le BrasYvan Le Bras, Anton NekrutenkoAnton Nekrutenko, Nicola SoranzoNicola Soranzo, Nick StolerNick Stoler, Torsten HouwaartTorsten Houwaart, Anika ErxlebenAnika Erxleben, Björn GrüningBjörn Grüning, Wolfgang MaierWolfgang Maier, Anna SymeAnna Syme, Simon GladmanSimon Gladman, Torsten SeemannTorsten Seemann

References