Khaled Jum'ah

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

28 Tutorials

• Variant Analysis / Querying the University of Bradford GDC Beacon Database for Copy Number Variants (CNVs) ✍️
• Variant Analysis / Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching for Variants with Beacons ✍️
• Variant Analysis / Calling variants in diploid systems ✍️
• Variant Analysis / Somatic Variant Discovery from WES Data Using Control-FREEC ✍️ 🧐
• Epigenetics / Infinium Human Methylation BeadChip ✍️ 🧐
• Computational chemistry / Data management in Medicinal Chemistry 🧐
• FAIR Data, Workflows, and Research / Data Registration ✍️ 🧐
• FAIR Data, Workflows, and Research / Making clinical datasets FAIR 🧐
• FAIR Data, Workflows, and Research / FAIR Bioimage Metadata 🧐
• FAIR Data, Workflows, and Research / Sequence data submission to ENA 🧐
• FAIR Data, Workflows, and Research / FAIR and its Origins ✍️ 🧐
• FAIR Data, Workflows, and Research / FAIR data management solutions 🧐
• FAIR Data, Workflows, and Research / Access ✍️ 🧐
• FAIR Data, Workflows, and Research / REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data 🧐
• FAIR Data, Workflows, and Research / Introduction to Data Management Plan (DMP) for Peatland Research and PeatDataHub 🧐
• FAIR Data, Workflows, and Research / FAIR Galaxy Training Material 🧐
• FAIR Data, Workflows, and Research / FAIRification of an RNAseq dataset ✍️ 🧐
• FAIR Data, Workflows, and Research / Persistent Identifiers ✍️ 🧐
• FAIR Data, Workflows, and Research / FAIR in a nutshell 🧐
• FAIR Data, Workflows, and Research / Metadata ✍️ 🧐

2 Video Recordings

• Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease 💬 🗣

2 Events

• Galaxy Training Academy 2025 🧑‍🏫
• Galaxy Training Academy 2026 🧑‍🏫

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GitHub Activity

github Issues Reported

18 Merged Pull Requests

See all of the github Pull Requests and github Commits by Khaled Jum'ah.

• update Calling variants in non-diploid systems workflow
  variant-analysis
• Update the GTA varinat analysis learninig path
  template-and-tools
• Update the dtp (Calling variants in diploid systems) tutorial and test workflow
  variant-analysis
  GTA
• update Infnum trainng
  epigenetics
• update Beacon tutorials
  variant-analysis

Reviewed 5 PRs

We love our community reviewing each other's work!

• added FR server and Variant Analysis
  template-and-tools
• New Training: Introduction to Data Management Plan (DMP) for Peatland Research and PeatDataHub
  template-and-tools
  fair
• Add fair RNA tutorial, add news about adding the pathway, and fix the ELIXIR dash funder username
  template-and-tools
  computational-chemistry
  news
  fair
• Add Fair pointers tutorials
  variant-analysis
  template-and-tools
  epigenetics
  fair
• New hCNV galaxy tutorial

News

External Links

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