Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance
storage

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

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Contributors

This material was contributed to by:

Youri Hoogstrate avatar Youri HoogstrateEstelle Ancelet avatar Estelle AnceletMatthias Bernt avatar Matthias BerntAysam Guerler avatar Aysam GuerlerGildas Le Corguillé avatar Gildas Le CorguilléWilliam Durand avatar William DurandRoss Lazarus avatar Ross Lazarusorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruAssunta DeSanto avatar Assunta DeSantoorcid logoMartin Čech avatar Martin ČechClare Sloggett avatar Clare SloggettMarie Josse avatar Marie JosseErik Schill avatar Erik SchillDannon Baker avatar Dannon Bakerorcid logoBérénice Batut avatar Bérénice BatutHervé Ménager avatar Hervé Ménagerorcid logoCameron Hyde avatar Cameron Hydeorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoClemens Blank avatar Clemens Blankorcid logoPaul Zierep avatar Paul Ziereporcid logoWendi Bacon avatar Wendi Baconorcid logoArmin Dadras avatar Armin Dadrasorcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBjörn Grüning avatar Björn GrüningSimon Bray avatar Simon Brayorcid logoJohn Chilton avatar John ChiltonNiall Beard avatar Niall BeardNitesh Turaga avatar Nitesh Turagaorcid logoSaskia Hiltemann avatar Saskia HiltemannStéphanie Legras avatar Stéphanie Legrasorcid logoCristóbal Gallardo avatar Cristóbal GallardoCyril Monjeaud avatar Cyril Monjeaudorcid logoNicola Soranzo avatar Nicola SoranzoLoraine Guéguen avatar Loraine Guéguenorcid logoŁukasz Opioła avatar Łukasz OpiołaLain Pavot avatar Lain Pavotorcid logoJohn Davis avatar John Davisorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoHelena Rasche avatar Helena Rascheorcid logoNate Coraor avatar Nate CoraorDave B. avatar Dave B.

Funding

These individuals or organisations provided funding support for the development of this resource

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UFR
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de.NBI
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ELIXIR Europe
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.