Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

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Contributors

This material was contributed to by:

Hervé Ménager avatar Hervé MénagerLoraine Guéguen avatar Loraine GuéguenErik Schill avatar Erik Schillorcid logoCameron Hyde avatar Cameron HydeYouri Hoogstrate avatar Youri Hoogstrateorcid logoCristóbal Gallardo avatar Cristóbal GallardoAysam Guerler avatar Aysam Guerlerorcid logoNate Coraor avatar Nate Coraororcid logoBérénice Batut avatar Bérénice Batutorcid logoArmin Dadras avatar Armin Dadrasorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoMartin Čech avatar Martin ČechLain Pavot avatar Lain PavotClare Sloggett avatar Clare SloggettStéphanie Legras avatar Stéphanie LegrasWilliam Durand avatar William Durandorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBjörn Grüning avatar Björn Grüningorcid logoJohn Davis avatar John Davisorcid logoAndrei Variu avatar Andrei VariuDave B. avatar Dave B.orcid logoPaul Zierep avatar Paul Ziereporcid logoJohn Chilton avatar John Chiltonorcid logoWendi Bacon avatar Wendi BaconNiall Beard avatar Niall Beardorcid logoAlex Ostrovsky avatar Alex OstrovskyDenys Savchenko avatar Denys Savchenkoorcid logoClemens Blank avatar Clemens Blankorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoSaskia Hiltemann avatar Saskia HiltemannAssunta DeSanto avatar Assunta DeSantoorcid logoHelena Rasche avatar Helena Rascheorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruSimon Bray avatar Simon BrayRoss Lazarus avatar Ross LazarusDannon Baker avatar Dannon BakerNitesh Turaga avatar Nitesh TuragaGildas Le Corguillé avatar Gildas Le Corguilléorcid logoJohan Gustafsson avatar Johan GustafssonEstelle Ancelet avatar Estelle AnceletMatthias Bernt avatar Matthias BerntCyril Monjeaud avatar Cyril MonjeaudMarie Josse avatar Marie Josseorcid logoŁukasz Opioła avatar Łukasz Opioła

Funding

These individuals or organisations provided funding support for the development of this resource