Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Deepti Varshney

Twishi Gulati

Erwan Corre

Saskia Hiltemann

Alexandre Cormier

Nicola Soranzo

Felicitas Kindel

Anton Nekrutenko

Valentin Loux

Hélène Chiapello

Björn Grüning

Romane LIBOUBAN

Nathan Dunn

Laura Leroi

Simon Gladman

Guillaume Gautreau

Torsten Seemann

Anna Syme

Delphine Lariviere

Paul Zierep

Esteban Perez-Wohlfeil

Cristóbal Gallardo

Niall Beard

Simon Bray

Teresa Müller

Anika Erxleben

Anthony Bretaudeau

Miaomiao Zhou

Stéphanie Robin

Jonathan Kreplak

Bazante Sanders

Kenji Fujihara

Jasper Ouwerkerk

William Durand

Ekaterina Polkh

Mateo Boudet

Bérénice Batut

Maria Doyle

Gildas Le Corguillé

Helena Rasche

Funding

These individuals or organisations provided funding support for the development of this resource

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ABRomics

ELIXIR Europe

Avans

IFB