Bazante Sanders

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Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

2 Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

Learning Pathway: Introductory Python
Learning Pathway: Introductory SQL

38 Tutorials

Assembly / Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) ✍️ 📝
Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data ✍️ 📝
Genome Annotation / Identification of AMR genes in an assembled bacterial genome ✍️ 📝
Foundations of Data Science / Python - Globbing ✍️ 🧐
Foundations of Data Science / Python - Loops ✍️ 🧐
Foundations of Data Science / Python - Multiprocessing 📝
Foundations of Data Science / Python - Files & CSV ✍️ 🧐
Foundations of Data Science / Python - Introductory Graduation ✍️ 🧐
Foundations of Data Science / Python - Functions ✍️ 🧐
Foundations of Data Science / Python - Subprocess ✍️ 🧐
Foundations of Data Science / Python - Try & Except ✍️ 🧐
Foundations of Data Science / Python - Argparse 📝 🧐
Foundations of Data Science / Python - Testing 📝
Foundations of Data Science / Introduction to SQL ✍️
Foundations of Data Science / Python - Lists & Strings & Dictionaries ✍️ 🧐
Foundations of Data Science / Python - Flow Control ✍️ 🧐
Foundations of Data Science / Make & Snakemake ✍️
Foundations of Data Science / CLI basics ✍️
Foundations of Data Science / Python - Type annotations 📝
Foundations of Data Science / Python - Math ✍️ 🧐
Foundations of Data Science / Python - Basic Types & Type Conversion ✍️ 🧐
Foundations of Data Science / Advanced CLI in Galaxy ✍️
Contributing to the Galaxy Training Material / Teaching Python 📝

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Bazante Sanders

38 Tutorials Editorial Board 1 News

GTN contributor since 2020-12

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Modular python curriculum + notebooks without solutions
new tutorial

News

Assembly visualisation from the Bandage tool

New Tutorials: Genome assembly of a MRSA genome

24 March 2021

Two new assembly tutorials have been added to the GTN! These tutorials walk you through the process of assembling MRSA strains from real-world datasets. MRSA stands for “Methicillin- resistant Staphylococcus aureus, it is resistance to several antibiotics and is a common source of hospital-acquired infections and outbreaks. In this tutorial you will assess the quality of your data, perform an assembly and assess its quality, analyze your data for the presence of antimicrobial resistance (AMR) genes, and annotate the genome using Prokka and JBrowse.

new tutorial assembly mrsa amr nanopore illumina

GTN contributor since 2020-12

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