Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

Requirements

Before diving into this topic, we recommend you to have a look at:

• Galaxy introduction

Material

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

You can also use the following Docker image for these tutorials:

docker run -d -p 8080:80 quay.io/galaxy/genome-annotation-training

It will launch a flavored Galaxy instance available on http://localhost:8080.

Maintainers

This material is maintained by:

• Saskia Hiltemann (Contact gitter )
• Bérénice Batut

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

• Anika Erxleben
• Björn Grüning
• Anthony Bretaudeau
• Anna Syme
• Torsten Seemann
• Simon Gladman