Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

Requirements

Before diving into this topic, we recommend you to have a look at:

Introduction to Galaxy Analyses

Material

Lesson	Slides	Hands-on	Input dataset	Workflows	Galaxy tour	Galaxy instances
Introduction to Genome Annotation	slides
Genome Annotation prokaryote		tutorial Toggle Dropdown FR JA ES PT AR	zenodo_link			instances Galaxy Europe
Genome annotation with Maker eukaryote		tutorial Toggle Dropdown FR JA ES PT AR	zenodo_link	workflow
Genome annotation with Prokka prokaryote	slides	tutorial Toggle Dropdown FR JA ES PT AR	zenodo_link	workflow	interactive_tour	instances GVL Melbourne GVL-Tutorial Galaxy Europe Galaxy@GenOuest

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

You can also use the following Docker image for these tutorials:

docker run -d -p 8080:80 quay.io/galaxy/genome-annotation-training

It will launch a flavored Galaxy instance available on http://localhost:8080.

Maintainers

This material is maintained by:

Saskia Hiltemann,

Bérénice Batut

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

Simon Gladman