GMOD
Tutorials from the world of the Generic Model Organism Database (GMOD)
GMOD is a collection of open source software tools for managing, visualising, storing, and disseminating genetic and genomic data, many of which are directly interoperable.
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Material
JBrowse 1
Learn to use JBrowse v1 here.
MAKER
Genome Annotation with MAKER.
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Hands-on: Hands-on: Genome annotation with Maker (short) | |||||
Hands-on: Hands-on: Genome annotation with Maker |
InterMine
InterMine is a data warehouse you can query for interesting features and data.
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Hands-on: Hands-on: InterMine integration with Galaxy |
Apollo v2
Apollo is a collaborative, real time genome annotation editor.
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Hands-on: Hands-on: Refining Genome Annotations with Apollo (prokaryotes) | |||||
Hands-on: Hands-on: Refining Genome Annotations with Apollo (eukaryotes) |
Galaxy instances
You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.
Editorial Board
This material is reviewed by our Editorial Board:
Helena Rasche Anthony BretaudeauFor any question related to this topic and the content, you can contact them or visit our Gitter channel.
Contributors
This material was contributed to by:
Laura Leroi Katherine Cox Torsten Seemann Candace Savonen Frederick Tan Simon Gladman Anthony Bretaudeau Nathan Dunn Mateo Boudet Stéphanie Robin Yo Yehudi Bérénice Batut Anna Syme Helena Rasche Natalie Kucher Anton Nekrutenko Miaomiao Zhou Robert Meller Ava Hoffman Bazante Sanders Alexandre Cormier Elizabeth Humphries Avans Hogeschool Delphine Lariviere Saskia Hiltemann Daniela Butano Erwan CorreFunders
This material was funded by:
Gallantries EuroScienceGateway NHGRI ANVIL ABRomics NHGRI GDS Community Network