Plants

Set of tutorials from various topics that use plant datasets for analysis

For any question or discussions related to this topic, or to connect with others in the community, please visit the community chat:

  Community Matrix Chat

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Chloroplast genome assembly
plants nanopore jbrowse1 biodiversity
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity

FAIR Data, Workflows, and Research

Lesson Slides Hands-on Recordings Input dataset Workflows
DataPLANT ARCs
plants fair data stewardship

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
From small to large-scale genome comparison
plants prokaryote

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
16S Microbial analysis with Nanopore data
metabarcoding 16S nanopore microgalaxy plants

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
NCBI BLAST+ against the MAdLand
plants

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Analysis of plant scRNA-Seq Data with Scanpy
plants paper-replication

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Whole transcriptome analysis of Arabidopsis thaliana
miRNA plants stress tolerance

Editorial Board

This material is reviewed by our Editorial Board:

orcid logoDeepti Varshney avatar Deepti Varshneyorcid logoSaskia Hiltemann avatar Saskia Hiltemann

Contributors

This material was contributed to by:

orcid logoSabrina Zander avatar Sabrina Zanderorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoSaskia Hiltemann avatar Saskia HiltemannStella Eggels avatar Stella Eggelsorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-SolanoEsteban Perez-Wohlfeil avatar Esteban Perez-Wohlfeilorcid logoCristina Martins Rodrigues avatar Cristina Martins Rodriguesorcid logoTom Brown avatar Tom Brownorcid logoAnna Syme avatar Anna Symeorcid logoMartin Kuhl avatar Martin Kuhlorcid logoBjörn Grüning avatar Björn Grüningorcid logoWendi Bacon avatar Wendi BaconMehmet Tekman avatar Mehmet Tekmanorcid logoHelena Rasche avatar Helena RascheFabian Recktenwald avatar Fabian Recktenwaldorcid logoKevin Frey avatar Kevin Freyorcid logoDominik Brilhaus avatar Dominik Brilhausorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoTeresa Müller avatar Teresa Müller

Funding

These individuals or organisations provided funding support for the development of this resource

Logo
DataPLANT
Logo
DFG
Logo
MAdLand