Plants

Set of tutorials from various topics that use plant datasets for analysis

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Chloroplast genome assembly
plants nanopore jbrowse1 biodiversity
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity

FAIR Data, Workflows, and Research

Lesson Slides Hands-on Recordings Input dataset Workflows
DataPLANT ARCs
plants fair data stewardship

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
From small to large-scale genome comparison
plants prokaryote

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
16S Microbial analysis with Nanopore data
metabarcoding 16S nanopore microgalaxy plants

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
NCBI BLAST+ against the MAdLand
plants

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Analysis of plant scRNA-Seq Data with Scanpy
plants paper-replication

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Whole transcriptome analysis of Arabidopsis thaliana
miRNA plants stress tolerance

Editorial Board

This material is reviewed by our Editorial Board:

orcid logoDeepti Varshney avatar Deepti Varshneyorcid logoSaskia Hiltemann avatar Saskia Hiltemann

Contributors

This material was contributed to by:

orcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoDominik Brilhaus avatar Dominik Brilhausorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoCristina Martins Rodrigues avatar Cristina Martins Rodriguesorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoKevin Frey avatar Kevin Freyorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoBjörn Grüning avatar Björn Grüningorcid logoHelena Rasche avatar Helena Rascheorcid logoAnna Syme avatar Anna Symeorcid logoMartin Kuhl avatar Martin KuhlFabian Recktenwald avatar Fabian RecktenwaldMehmet Tekman avatar Mehmet Tekmanorcid logoTeresa Müller avatar Teresa MüllerEsteban Perez-Wohlfeil avatar Esteban Perez-Wohlfeilorcid logoTom Brown avatar Tom Brownorcid logoWendi Bacon avatar Wendi Baconorcid logoSabrina Zander avatar Sabrina ZanderStella Eggels avatar Stella Eggels

Funding

These individuals or organisations provided funding support for the development of this resource

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DFG
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MAdLand
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DataPLANT