Deepti Varshney
Affiliations
Contributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
Editorial Roles
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
- Topic: Plants
Tutorials
- Sequence analysis / NCBI BLAST+ against the MAdLand ✍️ 🧐
- Sequence analysis / Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants ✍️
- Using Galaxy and Managing your Data / Understanding Galaxy history system 🧐
- Genome Annotation / From small to large-scale genome comparison 🧐
- Genome Annotation / Long non-coding RNAs (lncRNAs) annotation with FEELnc 🧐
- Genome Annotation / Identification of AMR genes in an assembled bacterial genome 🧐
- Genome Annotation / Genome annotation with Braker3 🧐
- Microbiome / Building an amplicon sequence variant (ASV) table from 16S data using DADA2 🧐
- Microbiome / 16S Microbial analysis with Nanopore data 🧐
- Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition 🧐
- Microbiome / Binning of metagenomic sequencing data 🧐
- Microbiome / Calculating α and β diversity from microbiome taxonomic data 🧐
- Assembly / Large genome assembly and polishing 🧐
- Assembly / Decontamination of a genome assembly 🧐
- Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data 🧐
- Assembly / ERGA post-assembly QC 🧐
- Assembly / Chloroplast genome assembly 🧐
Video Recordings
- Sequence analysis / Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants 💬 🗣
Events
GitHub Activity github Issues Reported
External Links
Favourite Topics
Favourite Formats