Daniel Blankenberg

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Tutorials

• Single Cell / Pre-processing of 10X Single-Cell RNA Datasets ✍️
• Statistics and machine learning / Text-mining with the SimText toolset ✍️
• Statistics and machine learning / PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis ✍️
• Statistics and machine learning / Supervised Learning with Hyperdimensional Computing 🧐
• Proteomics / Machine Learning Modeling of Anticancer Peptides ✍️
• Proteomics / Peptide Library Data Analysis ✍️
• Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis ✍️
• Introduction to Galaxy Analyses / NGS data logistics ✍️

Slides

• Galaxy Server administration / Gearing towards production ✍️
• Galaxy Server administration / Reference Data with CVMFS ✍️
• Galaxy Server administration / Reference Genomes in Galaxy ✍️

Video Recordings

• Sequence analysis / Mapping 💬

GitHub Activity

github Issues Reported

11 Merged Pull Requests

See all of the github Pull Requests and github Commits by Daniel Blankenberg.

• Add google translate links to slide buttons.
• avaialble to available
  transcriptomics
• 10x SC: Only import Cell Barcodes once
  transcriptomics
• history to library label in collections tutorial
• "Filter options" to "Read Modification Options"

Reviewed 3 PRs

We love our community reviewing each other's work!

• Add tutorial: Supervised Learning with Hyperdimensional Computing
  statistics
• LICENSE update: Add MIT license for infrastructure / scripts
  review-needed
• Change the license to CC BY 4.0
  improvement
  review-needed

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