Alex Ostrovsky

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Tutorials

Assembly / Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step ✍️
Assembly / Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data ✍️
Development in Galaxy / Creating Galaxy tools from Conda Through Deployment ✍️ 🧐
Single Cell / Downstream Single-cell RNA analysis with RaceID ✍️
Introduction to Galaxy Analyses / Galaxy Basics for everyone 🧐
Variant Analysis / Calling variants in non-diploid systems ✍️ 🧐

Slides

Development in Galaxy / Tool Dependencies and Conda 🧐
Development in Galaxy / Tool Dependencies and Containers 🧐
Single Cell / Dealing with Cross-Contamination in Fixed Barcode Protocols ✍️
Single Cell / Plates, Batches, and Barcodes ✍️

FAQs

Video Recordings

Development in Galaxy / Creating Galaxy tools from Conda Through Deployment 💬 🗣
Introduction to Galaxy Analyses / Galaxy Basics for everyone 💬 🗣

GitHub Activity

Issues Reported

8 Merged Pull Requests

See all of the github Pull Requests and github Commits by Alex Ostrovsky.

Reviewed 2 PRs

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News

New Tutorial: VGP assembly pipeline

14 March 2022

Author(s)

Cristóbal Gallardo

Delphine Lariviere

Alex Ostrovsky

new tutorial assembly pacbio vgp

We are proud to announce that, as result of the collaboration with the Vertebrate Genomes Project (VGP), a new training describing the VGP assembly pipeline is now available in the Galaxy Training Network. The Vertebrate Genomes Project aims to generate high-quality, near-error-free, gap-free, chromosome-level, haplotype-phased, annotated reference genome assemblies for every vertebrate species.

Full Story