Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
Mass spectrometry imaging: Finding differential analytes
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
Mass spectrometry: LC-MS analysis
Mass spectrometry: LC-MS data processing
Mass spectrometry: LC-MS preprocessing with XCMS
Molecular formula assignment and mass recalibration with MFAssignR package
Predicting EI+ mass spectra with QCxMS

Frequently Asked Questions

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le CorguilléMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie Föll

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Contributors

This material was contributed to by:

Jean-François Martin avatar Jean-François Martinorcid logoHelena Rasche avatar Helena Rascheorcid logoHelge Hecht avatar Helge Hechtorcid logoMatej Troják avatar Matej TrojákSimon Bray avatar Simon Brayorcid logoMelanie Föll avatar Melanie Föllorcid logoMaxim Skoryk avatar Maxim Skorykorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoKristina Gomoryova avatar Kristina GomoryovaCécile Canlet avatar Cécile CanletMaren Stillger avatar Maren StillgerSimeon Schum avatar Simeon Schumorcid logoJulia Jakiela avatar Julia JakielaGildas Le Corguillé avatar Gildas Le CorguilléJulien Saint-Vanne avatar Julien Saint-Vanneorcid logoBjörn Grüning avatar Björn GrüningMélanie Petera avatar Mélanie PeteraWorkflow4Metabolomics core team avatar Workflow4Metabolomics core teamYann Guitton avatar Yann Guittonorcid logoBérénice Batut avatar Bérénice Batut

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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UFR