Metabolomics — Editorial Board Home

This is a new, experimental "Editorial Board Home" for a given topic. It is intended to provide a single place for maintainers and editorial board members to find out key information about their topic and identify action items.

Editorial Board

Mélanie Petera Melanie Föll Gildas Le Corguillé

Action Items

Item	Status	Why you should do this
Summary	Done ✅	Provide a sufficiently detailed summary of the topic to let learners know what they're learning about in this topic.
Sufficient Editorial Board Members	Done ✅ (3 members)	Having multiple people sharing the burden of being responsible for a specific topic can reduce board member burn-out in the long term.
Enable Subtopics	Pending ❌	Subtopics help organize the content and make it easier to navigate.
Annotate Funders	Done ✅ (2 funders)	By annotating the funders of your topic's materials, you make it easier to write your grant reports later
Learning Pathway CTA	Pending ❌	By providing a Learning Pathway CTA, we can help guide learners to the best resources for learning about this topic.
Review Feedback Received	Ongoing 🔁	Review all feedback received for the Metabolomics topic and create GitHub issues or PRs where needed.
Review open Pull Requests	Ongoing 🔁	View all open PRs in the Metabolomics topic and review, comment and merge!
Review open GitHub Issues	Ongoing 🔁	View all open issues related to the Metabolomics topic and comment, fix, or ask others for help!

Topic Materials

Material	Contributions v2 help	Pre-requisites help	Follow up trainings	Data on Zenodo	Notebook	Server Compatibility
Introduction to Metabolomics	❌			✅		View
Mass spectrometry : GC-MS analysis with metaMS package	❌	✅		✅		View
Mass spectrometry imaging: Examining the spatial distribution of analytes	✅			✅		View
Mass spectrometry imaging: Finding differential analytes	❌	✅		✅		View
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)	✅	✅		✅		View
Mass spectrometry: LC-MS analysis	✅			✅		View
Mass spectrometry: LC-MS data processing	✅			✅		View
Mass spectrometry: LC-MS preprocessing with XCMS	✅			✅		View
Molecular formula assignment and mass recalibration with MFAssignR package	✅	✅		✅		View
Predicting EI+ mass spectra with QCxMS	✅	✅		✅		View

Topic Workflows

Material	Workflow	Updated	Version	Tests	Reports	Comments
Mass spectrometry imaging: Examining the spatial distribution of analytes	MSI Workflow: spatial distribution	Jul 16, 2025	1	❌	❌	❌
Mass spectrometry imaging: Finding differential analytes	MSI Finding Diff Analytes	Jul 16, 2025	4	❌	❌	❌
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)	GC MS using XCMS	Jul 16, 2025	2	✅	❌	❌
Mass spectrometry: LC-MS analysis	Workflow Constructed From History 'imported: testpourGCC'	Jul 16, 2025	4	❌	❌	❌
Molecular formula assignment and mass recalibration with MFAssignR package	Molecular formula assignment and recalibration with MFAssignR package.	Jul 16, 2025	1	✅	✅	✅
Predicting EI+ mass spectra with QCxMS	End-to-end EI+ mass spectra prediction workflow using QCxMS	Jul 16, 2025	1	✅	✅	✅

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TODO once this is merged: https://github.com/galaxyproject/training-material/pull/4963

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