FAIR Data, Workflows, and Research

These lessons will teach you how to make your research objects more FAIR with practical, hands-on advice.

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Material

FAIR Data Management

The FAIR (Findable, Accessible, Interoperable, Reusable) data stewardship created the foundation for sharing and publishing digital assets. These lessons will apply to machine accessibility and emphasize that all digital assets should share data in a way that will enable maximum use and reuse.

Lesson Slides Hands-on Recordings Input dataset Workflows
FAIR in a nutshell
Making clinical datasets FAIR
Sequence data submission to ENA
FAIR data management solutions
FAIR Galaxy Training Material
FAIR Bioimage Metadata
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data
FAIRification of an RNAseq dataset

Make workflows FAIR with RO-Crate

This section brought to you by the BY-COVID project, and will teach you how to make your research objects more FAIR with practical, hands-on advice.

Lesson Slides Hands-on Recordings Input dataset Workflows
RO-Crate - Introduction
Workflow Run RO-Crate Introduction
Exporting Workflow Run RO-Crates from Galaxy
RO-Crate in Python
Best practices for workflows in GitHub repositories
Submitting workflows to LifeMonitor

FAIR Pointers

This series of lessons will tackle FAIR from the perspective of the 15 FAIR Principles published in 2016. You will learn about: FAIR and its origins The FAIR Principles and its basic characteristics.

Lesson Slides Hands-on Recordings Input dataset Workflows
FAIR and its Origins
Metadata
Data Registration
Access
Persistent Identifiers

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Data management in Medicinal Chemistry

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoSimone Leo avatar Simone Leoorcid logoLuca Pireddu avatar Luca Piredduorcid logoStian Soiland-Reyes avatar Stian Soiland-Reyesorcid logoPaul De Geest avatar Paul De Geestorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowicz

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

orcid logoMunazah Andrabi avatar Munazah Andrabiorcid logoMarco Enrico Piras avatar Marco Enrico Pirasorcid logoEli Chadwick avatar Eli Chadwickorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoBruno P. Kinoshita avatar Bruno P. Kinoshitaorcid logoPaul De Geest avatar Paul De Geestorcid logoPeter Sefton avatar Peter Seftonorcid logoSara Morsy avatar Sara Morsyorcid logoPhilippe Rocca-Serra avatar Philippe Rocca-SerraJulia Jakiela avatar Julia Jakielaorcid logoSimone Leo avatar Simone Leoorcid logoAndrew Mason avatar Andrew Masonorcid logoSaskia Lawson-Tovey avatar Saskia Lawson-Toveyorcid logoRobert Andrews avatar Robert Andrewsorcid logoStian Soiland-Reyes avatar Stian Soiland-ReyesLaura Cooper avatar Laura CooperSandra Ng avatar Sandra Ngorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoLuca Pireddu avatar Luca Piredduorcid logoKatarzyna Kamieniecka avatar Katarzyna KamienieckaLaura Cooper avatar Laura Cooperorcid logoBranka Franicevic avatar Branka FranicevicKorneel Hens avatar Korneel HensSonal Henson avatar Sonal HensonKellie Snow avatar Kellie SnowTim Beck avatar Tim Beckorcid logoXenia Perez Sitja avatar Xenia Perez Sitjaorcid logoHelena Rasche avatar Helena Rascheorcid logoNick Juty avatar Nick Juty

Funders

This material was funded by:

BeYond-COVID avatar BeYond-COVIDDASH UK avatar DASH UKEuroScienceGateway avatar EuroScienceGateway