Mateo Boudet

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Tutorials

Transcriptomics / RNA-Seq analysis with AskOmics Interactive Tool ✍️
Variant Analysis / Calling very rare variants 🧐
Genome Annotation / Refining Genome Annotations with Apollo (prokaryotes) ✍️
Sequence analysis / Quality Control 🧐

Slides

GitHub Activity

Issues Reported

1 Merged Pull Requests

See all of the github Pull Requests and github Commits by Mateo Boudet.

Minor revisions to 'RNA-Seq analysis with AskOmics Interactive Tool' tutorial

Reviewed 1 PRs

We love our community reviewing each other's work!

Update Quality Control tutorial with long reads analysis
sequence-analysis

News

New Tutorial: Genome Annotation with Apollo

Screenshot of Apollo embedded within the Galaxy Europe interface, Apollo shows a couple of gene tracks.

4 June 2021

Author(s)

Anthony Bretaudeau

Helena Rasche

Nathan Dunn

Mateo Boudet

new tutorial genome-annotation

After two years, the Galaxy Genome Annotation team has finally finished their much awaited tutorial on doing Genome Annotation in Galaxy! Genome annotation is a time consuming and largely manual process as it requires the synthesis of a significant amount of varied information to make inferences, a process tha cannot be accomplished without an interactive editor. To support this, Apollo was deployed on UseGalaxy.eu. Over the past two years the GGA project has pushed forward apollo and tooling around it, and it finally culminates in this look at how to annotated your genomes in Apollo.

Full Story