FastQC: Read Quality reports
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1
Metadata
Links
EDAM Operations
EDAM Topics
Observed Tool Versions
Within GTN tutorials
0.74+galaxy1
0.74+galaxy0
0.73+galaxy0
0.72
0.72+galaxy1
0.69
Relevant Tutorials
- Assembly / An Introduction to Genome Assembly
- Assembly / Large genome assembly and polishing
- Assembly / Assembly of metagenomic sequencing data
- Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
- Assembly / Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
- Assembly / Unicycler Assembly
- Ecology / Data submission using ENA upload Tool
- Ecology / Metabarcoding/eDNA through Obitools
- Ecology / RAD-Seq de-novo data analysis
- Ecology / RAD-Seq Reference-based data analysis
- Epigenetics / ATAC-Seq data analysis
- Epigenetics / CUT&RUN data analysis
- Epigenetics / Identification of the binding sites of the Estrogen receptor
- Epigenetics / Formation of the Super-Structures on the Inactive X
- Epigenetics / DNA Methylation data analysis
- Epigenetics / Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
- Genome Annotation / CRISPR screen analysis
- Introduction to Galaxy Analyses / A short introduction to Galaxy
- Microbiome / Identification of the micro-organisms in a beer using Nanopore sequencing
- Microbiome / Assembly of metagenomic sequencing data
- Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data
- Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short)
- Microbiome / 16S Microbial analysis with Nanopore data
- Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
- Sequence analysis / Mapping
- Sequence analysis / Quality and contamination control in bacterial isolate using Illumina MiSeq Data
- Sequence analysis / Quality Control
- Sequence analysis / SARS-CoV-2 Viral Sample Alignment and Variant Visualization
- Single Cell / Pre-processing of 10X Single-Cell ATAC-seq Datasets
- Single Cell / Understanding Barcodes
- Transcriptomics / CLIP-Seq data analysis from pre-processing to motif detection
- Transcriptomics / De novo transcriptome reconstruction with RNA-Seq
- Transcriptomics / Genome-wide alternative splicing analysis
- Transcriptomics / De novo transcriptome assembly, annotation, and differential expression analysis
- Transcriptomics / Pathway analysis with the MINERVA Platform
- Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana
- Transcriptomics / Reference-based RNA-Seq data analysis
- Transcriptomics / RNA-RNA interactome data analysis
- Transcriptomics / 1: RNA-Seq reads to counts
- Transcriptomics / Differential abundance testing of small RNAs
- Variant Analysis / Calling very rare variants
- Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease
- Variant Analysis / Calling variants in non-diploid systems
- Variant Analysis / Somatic Variant Discovery from WES Data Using Control-FREEC
- Variant Analysis / Identification of somatic and germline variants from tumor and normal sample pairs
- Variant Analysis / M. tuberculosis Variant Analysis