Map with BWA-MEM: - map medium and long reads (> 100 bp) against reference genome
toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.18
Metadata
Links
EDAM Operations
EDAM Topics
Observed Tool Versions
Within GTN tutorials
0.7.18
0.7.17.2
Relevant Tutorials
- Assembly / Chloroplast genome assembly
- Using Galaxy and Managing your Data / Using dataset collections
- Introduction to Galaxy Analyses / NGS data logistics
- Sequence analysis / Removal of human reads from SARS-CoV-2 sequencing data
- Sequence analysis / SARS-CoV-2 Viral Sample Alignment and Variant Visualization
- Single Cell / Pre-processing of 10X Single-Cell ATAC-seq Datasets
- Single Cell / Single-cell ATAC-seq standard processing with SnapATAC2
- Variant Analysis / Avian influenza viral strain analysis from gene segment sequencing data
- Variant Analysis / Calling very rare variants
- Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease
- Variant Analysis / Calling variants in non-diploid systems
- Variant Analysis / Pox virus genome analysis from tiled-amplicon sequencing data
- Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
- Variant Analysis / Somatic Variant Discovery from WES Data Using Control-FREEC
- Variant Analysis / Identification of somatic and germline variants from tumor and normal sample pairs